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Official code repository for GATK versions 4 and up
INACTIVE: A simple docker client for the JVM
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
A Java API for high-throughput sequencing data (HTS) formats.
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support
Cloud agnostic genomics analysis, scientific computation and storage platform
HTSJDK plugin for multihreaded loading of SAM/BAM files stored in AWS S3