Hi, Thank you for providing great tool.
I have run the LongGf and got the output. However, the result do not give out any gene names. Number of supporting reads and coordinates are shown. Could you tell me what is happening? For your information, I added GTF line of artificial transcript with single exon to encompass intronic region. It worked in my previous analysis with Drosophila gene annotation. Following are examples of my results.
SumGF : 89 4:90838865 X:12976936
SumGF : 85 12:3211769 1:153991622
SumGF : 74 17:36104584 17:36211832
SumGF : 70 7:98386437 4:151101011
SumGF : 69 7:137514210 12:56117818
SumGF : 64 4:108622204 1:153995706
SumGF : 59 2:3575679 17:28467891
SumGF : 46 X:119786504 6:73372907
SumGF : 38 19:17862182 12:104265518
SumGF : 37 1:77129331 18:49489428
Hi, Thank you for providing great tool.
I have run the LongGf and got the output. However, the result do not give out any gene names. Number of supporting reads and coordinates are shown. Could you tell me what is happening? For your information, I added GTF line of artificial transcript with single exon to encompass intronic region. It worked in my previous analysis with Drosophila gene annotation. Following are examples of my results.
SumGF : 89 4:90838865 X:12976936
SumGF : 85 12:3211769 1:153991622
SumGF : 74 17:36104584 17:36211832
SumGF : 70 7:98386437 4:151101011
SumGF : 69 7:137514210 12:56117818
SumGF : 64 4:108622204 1:153995706
SumGF : 59 2:3575679 17:28467891
SumGF : 46 X:119786504 6:73372907
SumGF : 38 19:17862182 12:104265518
SumGF : 37 1:77129331 18:49489428