The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained from Illumina or Oxford Nanopore Technology devices, respecti…

SIMD partial order alignment tool/library

FastContext: Training Efficient Repository Explorer for Coding Agents

Quickly search, compare, and analyze genomic and metagenomic data sets.

Makes your AI agent think like the laziest senior dev in the room. The best code is the code you never wrote.

Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing

fastcat is a single executable with subcommands for FASTQ and BAM summary/statistics workflows. It was originally written to santize and concatenate .fastq(.gz) files, hence the name.

Simulation of One Piece in-universe Vegapunk's Labophase Punk Record

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads

Phigaro is a scalable command-line tool for predicting phages and prophages

PyMuPDF is a high performance Python library for data extraction, analysis, conversion & manipulation of PDF (and other) documents.

A fast, helpful, and open-source document parser

markdown file of full pinescript v6 file for LLM's to ingest

Read-only developer endpoint scanner for on-disk package, extension, and developer-tool metadata, built to check exposure to known software supply-chain compromises.

Rapid & standardized genome annotation using protein structural information

Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python

Installable GitHub library of 1,500+ agentic skills for Claude Code, Cursor, Codex CLI, Gemini CLI, Antigravity, and more. Includes specialized plugins, installer CLI, bundles, workflows, and offic…

Financial data platform for analysts, quants and AI agents.

A command line tool to identify and annotate small proteins in microbial sequencing datasets.

Deep functional residue identification

Multi-AI MCP Server - Connect ChatGPT, Claude, Gemini & Perplexity to your coding tools without any API

A comprehensive prokaryotic genome annotation pipeline

CLI proxy that reduces LLM token consumption by 60-90% on common dev commands. Single Rust binary, zero dependencies

Persistent Context Across Sessions for Every Agent – Captures everything your agent does during sessions, compresses it with AI, and injects relevant context back into future sessions. Works with C…

A tool to find genomic islands in any genome based on tetranucleotide frequency divergence.

The agent that grows with you