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snakevision Public
Forked from OpenOmics/snakevisionAn awesome tool to visualize snakemake rule graphs
Python MIT License UpdatedApr 29, 2026 -
snakemake-github-action Public
Forked from snakemake/snakemake-github-actionA Github action for running a Snakemake workflow
MIT License UpdatedApr 24, 2026 -
snakemake-workflow-catalog Public
Forked from snakemake/snakemake-workflow-catalogA statically generated catalog of available Snakemake workflows
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cell-economy-models Public
Cellular economy models for simulation of biological optimizaton problems
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singularity-cli Public
Forked from singularityhub/singularity-clistreamlined singularity python client (spython) for singularity
Python Mozilla Public License 2.0 UpdatedDec 14, 2025 -
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stringtie Public
Forked from gpertea/stringtieTranscript assembly and quantification for RNA-Seq
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gffcompare Public
Forked from gpertea/gffcompareclassify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
C++ MIT License UpdatedOct 23, 2025 -
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snakemake-wrappers Public
Forked from snakemake/snakemake-wrappersThis is the development home of the Snakemake wrapper repository, see
Python UpdatedSep 24, 2025 -
ggcoverage Public
Forked from showteeth/ggcoverageVisualize and annotate genomic coverage with ggplot2
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ShinyLib Public
R Shiny based interface for browsing fitness data from transposon or CRISPRi libraries
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snakemake-catalog-test Public
Just a test repo.
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m-jahn.github.io Public
Project descriptions, publication list, blog, and other resources related to my work
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WeightedTreemaps Public
Create Voronoi and Sunburst Treemaps from Hierarchical data
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fluctuator Public
R package to Import and Modify SVG (XML) Graphic Files
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R-notebook-ralstonia-energy Public
Pipelines for data analysis and visualization of the Ralstonia energy metabolism
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shiny-genome-stats Public
R Shiny App to show basic features of microbial genomes
R GNU General Public License v3.0 UpdatedJul 16, 2024 -
FlaGs2 Public
Forked from GCA-VH-lab/FlaGs2Updated FlaGs version. Replaces tkinter module for matplotlib for the graphical output.
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ShinyMC Public
R Shiny based interface for monitoring bioreactors
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lab-notebook Public
Digital Laboratory Notebook with R markdown
HTML GNU General Public License v3.0 UpdatedNov 27, 2023 -
lattice-tools Public
Panel functions and wrappers to extend the R lattice universe
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R-notebook-crispri-lib Public
R markdown notebooks for analysis of CRISPR inhibition library data
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ShinyTreemaps Public
R Shiny app for easy creation of Voronoi and Sunburst treemaps
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TnSeq-pipe Public
TnSeq data processing workflow
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rebar Public
Forked from Asplund-Samuelsson/rebarRalstonia eutropha BarSeq analysis
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