Nextflow plugin for cgroup-based memory tracking in containerized environments

UCSC Genome Browser source. "beta" is released version / "master" is testing.

Specifications of SAM/BAM and related high-throughput sequencing file formats

Homology-based reference genome acquisition and comparison

Research Software Quality Kit - a resource for helping researchers improve the quality of software they write

A memory safe implementation of sudo and su.

Cross-platform Rust rewrite of the GNU coreutils

Rust programming, in French.

AWS JavaScript S3 Explorer is a JavaScript application that uses AWS's JavaScript SDK and S3 APIs to make the contents of an S3 bucket easy to browse via a web browser.

Create notification messages from nextflow using incoming webhooks for Slack.

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

Genome browser and variant annotation

A tool to find sequencing data and metadata from public databases.

A Compiler Writing Journey

Using Deep Learning to predict gene annotations

A eukaryotic genome annotation pipeline

SV genotyping with long reads

SV genotyper for long reads with a variation graph

The original sources of MS-DOS 1.25, 2.0, and 4.0 for reference purposes

The original source code of Microsoft GW-BASIC from 1983

Microsoft BASIC for 6502 Microprocessor - Version 1.1

Rich is a Python library for rich text and beautiful formatting in the terminal.

Pangenome-based genome inference

Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).

Toy RNAseq pipeline, to test interplay of Nextflow with SHPC container modules

himut enables single-molecule somatic mutation detection using PacBio Sequel IIe CCS reads

A Kmer-based tools to evaluate and improve genome assemblies

Tool for fully-automated inference of species trees from raw genome assemblies