A curated list of awesome Python code formatters

Data analysis scripts for "Atlas of plasma NMR biomarkers for health and disease in 118,461 individuals from the UK Biobank".

Interface to use R from Python

Python package to access a cacophony of neuro-imaging file formats

A statistics and context decoding toolbox for neuroimaging.

Maps of cortical organization

agent-based S-I-R model for neurodegeneration

A tool for AI-assisted meta-review of scientific papers

Code for computing interareal axonal connectivity in mouse

Code to reproduce analyses of mouse cortical gradients

Workflow for retrieving spatial gene-expression data from the Allen Institute's Mouse Brain Atlas

Machine Learning Course, Sharif University of Technology

Fast brain extraction using neural networks

3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)

A very small toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)

Workflows and interfaces for neuroimaging packages

PREEMACS. pipeline for PREprocessing and Extraction of the MACaque brain Surface

The data and code of Saberi et al. 2023 PLOS Biology

CSV file and R package for collecting gene ortholog information from NCBI.

Python Imaging Library (Fork)

reanalysis of Brainspan data

Connectome workbench & GIFTI/CIFTI tutorial

Connectome Workbench

Combined cortical/subcortical atlases for xcp-d and qsiprep

Processing pipelines for the HCP