scTypeEval is an R package designed for the assessment and validation of cell type classifications in single-cell transcriptomics. In the absence of ground truth annotations, scTypeEval leverages i…

Exploratory compositional data analysis of single-cell data

TCR-epitope motif-based interaction predictor

Robust and scalable single-cell signature scoring

Single-cell analysis in Python. Scales to >100M cells.

A database of useful gene signatures for single-cell analysis

Code to reproduce the results by Yerly et al. (2024)

Methods to discover gene programs on single-cell data

Gene set scoring for single-cell data

Cell type gating models for scGate

Coarse-graining of large single-cell RNA-seq data into metacells

R toolkit for the analysis of single-cell chromatin data