update version

update version

slight memory increases, especially on consensus when generating BAMs

update version

fix release build script

ensure we fail when conversion of hic pairs fails, don't track mis-so…

…rted reads to save memory

fix incorrect trim point and trim overlap size too

Check for required dependencies depending on what pipelien we're runn…

…ing (e.g. graphaligner only for ONT, bwa only for HiC, etc)

Update rukki tag

Replace call to process_reads.py with call to fasta_extract.py in 7-c…

…ombineConsensus.sh for haplotype-aware assemblies.