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scVI.jl Public
A Julia package for fitting VAEs to single-cell data using count distributions.
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LatentDynamics.jl Public
A Julia package for learning dynamics based on ODEs in the latent space of a VAE
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scManifoldDynamics Public
Forked from laia-cg/scManifoldDynamicsFramework for evaluating discrepancies in dimension reduction for structure in time-series single-cell RNA-sequencing data
HTML UpdatedApr 1, 2025 -
Investigating a domain adaptation approach for integrating different measurement instruments in a longitudinal clinical registry using ODEs and VAEs
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Muon.jl Public
Forked from scverse/Muon.jlMuon for Julia
Julia BSD 3-Clause "New" or "Revised" License UpdatedApr 28, 2023 -
SnowyOwl.jl Public
Forked from jhlabtw/SnowyOwl.jlA single-cell RNA sequencing data analysis toolkit in Julia.
Julia MIT License UpdatedApr 27, 2023 -
Jupyter notebook giving an overview of popular dimension reduction methods for single-cell RNA-seq data.
Jupyter Notebook MIT License UpdatedFeb 26, 2023 -
Code notebooks and further materials for the workshop on "Differentiable programming for flexible modelling with small data" at the 8th NORBIS conference, 24-28 October 2022, Rosendal (Norway).
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Python-Course-21 Public
Forked from heylf/Python_Course_2018_defJupyter Notebook UpdatedOct 15, 2022 -
multiomics_dgms Public
Forked from MTreppner/multiomics_dgmsThis is the repository that accompanies the paper "Assessing the power of deep generative models for learning joint embeddings of single-cell multi-omics data."
Python MIT License UpdatedSep 23, 2022 -
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Illustrating how statistical modeling can benefit from differentiable programming in challenging modeling tasks.
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Combining deep learning and dynamic modeling to fit individual trajectories based on very few time points
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MSc-Thesis Public
Thesis of my M.Sc. Maths degree: "Temporal Dynamics in Generative Models" (2020)
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LogLinearModels.jl Public
Forked from ssehztirom/LogLinearModels.jlFitting of log linear models via iterative proportional fitting
Julia UpdatedJan 4, 2021 -
PatternsByLogLin.jl Public
Forked from ssehztirom/PatternsByLogLin.jlExtract patterns from categorical data in Julia.
Julia UpdatedAug 24, 2020 -
Exploring-generative-deep-learning-for-omics-data-by-using-log-linear-models Public
Forked from ssehztirom/Exploring-generative-deep-learning-for-omics-data-by-using-log-linear-modelsJupyter Notebook UpdatedJun 30, 2020 -
covid-19-germany-gae Public
Forked from jgehrcke/covid-19-germany-gaeCOVID-19 case count in Germany state-by-state, over time (HTTP API and CSV file)
HTML MIT License UpdatedApr 2, 2020
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