Lists (5)
Stars
A tutorial using bModelTest
🥑 ArangoDB is a native multi-model database with flexible data models for documents, graphs, and key-values. Build high performance applications using a convenient SQL-like query language or JavaSc…
Masking the terminal damaged bases in BAM file
A MIxS extension proposal for 'ancient' samples
tree visualization for tree + annotation data
TOGA2: A faster, more versatile successor of Tool to infer Orthologs from Genome Alignments
A workflow for integrating ancient lineages into present-day phylogenies.
two-frontiers-project / 2FP-XTree
Forked from knights-lab/UTreeFast and efficient genome alignment across domains
A post-mapping authentication toolkit for ancient metagenomics
A tool for phylogenetic interpretation of human mtDNA sequence mixtures
A workflow for the analysis of human nuclear DNA from sediments
Automatically exported from code.google.com/p/figtree
This book summarises prepared mini-courses for various computational tools and methods in the field of human archaeogenetic data analysis, with a particular emphasis on population genetics.
OpenMW is an open-source open-world RPG game engine that supports playing Morrowind. Main repo and issue tracker can be found here: https://gitlab.com/OpenMW/openmw/
Documentation that simply works
Python package to plot a phylogenetic tree on an existing matplotlib axis.
Minimum Information about any (X) Sequence” (MIxS) specification
Project genomes onto pre-computed principal components widely used in ancient DNA. Enables fast analysis without re-computing the principal components.
Holi is an open-source research codebase supporting reproducible scientific analysis. It contains scripts for running metagenomic assignments and a wiki with documentation and explanation of the di…
Hakai Fork of HOLI pipeline
An android app for tracking personal data and creating custom graphs
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.