Stars
Mumemto: multi-MUM and MEM finding across pangenomes
Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
A reimplementation of the WaveFront Alignment algorithm at low memory
Fast & memory efficient hashtable based on robin hood hashing for C++11/14/17/20
A high-performance, Pythonic language for bioinformatics
CrossMap is a python program to lift over genome coordinates from one genome version to another.
A Nextflow workflow to generate lift over files for any pair of genomes
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Profiling Germline Adaptive Immune Receptor Repertoire with gAIRR Suite
Package for fetching metadata and downloading data from SRA/ENA/GEO
A HTML/CSS Template for Building Projects or Personal Websites
More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original
A collection of work related to COVID-19
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
The second version of the Kraken taxonomic sequence classification system