working fork of NF cores Config files used to define parameters specific to compute environments at different Institutions

bedtools - the swiss army knife for genome arithmetic (mp15 hackery branch)

MP15's working samtools repo (not official release expect rebases)

Copy number caller for long read data including SNV utilization (mp15's private fork)

mp15's private copy

Private fork of Repository to host tool-specific module files for the Nextflow DSL2 community!

mp15's working fork of codecarbon for Pull requests etc.

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

C library for high-throughput sequencing data formats (MP15 private repo)

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

Pipeline to convert a haploid assembly into diploid (working copy)

Oxford Nanopore's Basecaller (mp15 working copy)

(private dev repo) Read-based phasing of genomic variants, also called haplotype assembly

(working copy) Detecting contamination in NGS data and multi-species analysis

A module for getting CPU info with pure Python (working tree)

A versatile pairwise aligner for genomic and spliced nucleotide sequences

MP15's private working fork of bwa-mem2

(fork for edits only) An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.

Private fork of Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.

A benchmark suite to study the performance characteristics of genomics applications

The source for the Linux kernel used in Windows Subsystem for Linux 2 (WSL2)

Deep Learning based variant calling toolkit - https://clara-parabricks.github.io/VariantWorks/

BioNanoAnalyst is a tool providing GUI to assess the genome assembly quality using BioNano data.