metagenomic toolkit - end-to-end solution for analysing metagenomes

Environmental metagenomics, Spring 2022, Physalia Courses

Environmental metagenomics, Spring 2023, Physalia Courses

Microbial co-occurrence network reveals climate and geographic patterns for soil diversity on the planet

Repo for a Microbiome Protocol

Data and Code associated to Simonin et al. 2021 BioRxiv Seed Microbiota Database

Publication-ready volcano plots with enhanced colouring and labeling

Enhancing {ggplot2} plots with statistical analysis 📊📣

GET_HOMOLOGUES: a versatile software package for pan-genome analysis

Scripts for bioinformatics analysis of sequencing data

Rapid large-scale prokaryote pan genome analysis

Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

🍄 Qiime2 ITS classifiers for the UNITE database

Bioinformatics and genomics resources

Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Microbial community analysis tools in R

phyloseq R

scripts and (some) figures for mustard flavor project

Scripts and data for Duran & Thiergart et al. Cell, 2018