A lightweight distributed Python runtime

a set of SKILLS.md for doing bioinformatics with agents like claude code

A cross-consortium CFDE metadata aggregator.

SQL dialect for genomic range queries

Dragon distributed runtime for HPC and AI applications and workflows

SciPy Pun Essences

A lightweight reimplementation of some of the algorithms in the MEME suite in Python.

Rusty juv

A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.

Create, manage, and run Jupyter notebooks with their dependencies

Repository for the nblink jupyterlite extension.

Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡

Genome assembly metadata

a scalable data profiler

A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.

Pythonic class-based interface to LLMs

Convert bioinformatics file formats to Zarr

Scientific colormaps for python, with only numpy dependency

Presentation Solara+AnyWidget at LINCS

A collection of creative AnyWidgets for Python notebook environments

Toolkit for single-cell DNA methylation analysis.

A simple anywidget, built from Mike Bostock's Mario chime snippet.

A JavaScript toolkit for working with chunked, compressed, n-dimensional arrays

A high-performance BigWig and BigBed library in Rust