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  • Massachusetts Institute of Technology
  • Cambridge, MA

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@VCG @fraenkel-lab @labsyspharm @SEASVis

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cfDNA Sequencing Pipeline with UMI

Python 11 3 Updated Dec 8, 2025

Framework to process and call somatic variation from NGS dataset generated using MSK-IMPACT assay

Perl 13 Updated Mar 15, 2019
Python 2 Updated Aug 17, 2023

Compendium of tools for the Imaging Platform

Python 15 5 Updated Apr 2, 2026

Supporting information from "Predicting the Mitochondrial Toxicity of Small Molecules: Insights From Mechanistic Assays and Cell Painting Data" by Marina Garcia de Lomana, Paula Andrea Marin Zapata…

Jupyter Notebook 4 1 Updated Jul 10, 2023
Jupyter Notebook 2 3 Updated Jun 9, 2024

🎓 Path to a free self-taught education in Computer Science!

HTML 203,005 25,254 Updated Mar 27, 2026

An introduction to bioimage analysis - http://bioimagebook.github.io

Python 76 15 Updated Feb 5, 2026

The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of dr…

Jupyter Notebook 185 46 Updated Sep 7, 2023

Images and other data from the JUMP Cell Painting Consortium

Shell 184 19 Updated Apr 6, 2026

Self-supervised models for encoding protein localization patterns from microscopy images

Python 84 16 Updated Aug 5, 2025

Morphological profiling using deep learning

Python 124 49 Updated Oct 19, 2024

Learning Single-Cell Perturbation Responses using Neural Optimal Transport

Python 168 20 Updated Oct 31, 2024
JavaScript 27 8 Updated Oct 23, 2025