What's Changed

• Update documentation by @erikrikarddaniel in #391
• Unzipped input can be used by @erikrikarddaniel in #394
• Single end reads can be used again by @erikrikarddaniel in #400
• New version of Eukulele 2.1.2 available. previous bug fixed. by @erikrikarddaniel in #405

Full Changelog: 1.2.0...1.3.0

• Write fasta files for hmmsearch hits
• Create Kofamscan output with unique hits
• Bug fixes
• nf-test tests for the pipeline

This release addresses a problem with the BBNorm process that sometimes got killed because it used too much memory. In addition, some tools were upgraded, among them all BBMap-based tools.

What's Changed

• bump version by @danilodileo in #263
• Fix badges by @maxulysse in #264
• Don't save unncessary megahit files by @erikrikarddaniel in #268
• Transdecoder bug by @danilodileo in #270
• Add spades options by @danilodileo in #272
• Merge in 1.0.1 by @erikrikarddaniel in #279
• Template update 2.13.1 manual config by @danilodileo in #278
• Bbnorm minid by @danilodileo in #282
• Update docs by @danilodileo in #283
• Nf test by @danilodileo in #285
• Add save formatspades option by @danilodileo in #286
• Template update 2.14.1 by @danilodileo in #290
• bump version by @danilodileo in #291
• Fix megahit memory by @erikrikarddaniel in #292
• Update output.md by @erikrikarddaniel in #295
• New diagram with labels by @danilodileo in #296
• Make eukulele count files optional by @erikrikarddaniel in #304
• Fixed mistake in last fix by @erikrikarddaniel in #305
• Template update3.1.1 by @danilodileo in #308
• Template update3.1.2 by @danilodileo in #310
• Update modules by @danilodileo in #311
• Diamond taxonomy by @erikrikarddaniel in #312
• Update modules by @danilodileo in #314
• Template update3.2.0 by @danilodileo in #318
• Update diamond tax by @erikrikarddaniel in #319
• Quick fix bbduk by @erikrikarddaniel in #321
• Parse taxstring by @erikrikarddaniel in #320
• Minor inconcistencies by @erikrikarddaniel in #323
• Minor inconcistencies 2 by @danilodileo in #325
• Improve overall stats, fix test_filter issue by @erikrikarddaniel in #326
• Fix passing of only one sample to BBDuk by @erikrikarddaniel in #328
• Update usage.md by @erikrikarddaniel in #330
• Update config demanging proj + add new nf-tests by @danilodileo in #331
• Modified tree structure by @danilodileo in #332
• Release fix 1.1.0 by @danilodileo in #333
• Update CHANGELOG.md by @danilodileo in #335
• Delete .nf-test.log by @danilodileo in #336
• stub run is working now by @danilodileo in #337
• Delete test_spades.nf.test by @danilodileo in #338
• Small fix by @danilodileo in #339
• Revert collect/stats a bit to reduce memory requirement by @erikrikarddaniel in #340
• Fix tests by @erikrikarddaniel in #341
• test to get rid of an error with gha by @danilodileo in #342
• fix tests by @danilodileo in #343
• Quick fix of COLLECT_STATS! by @erikrikarddaniel in #345
• Fix 2files by @erikrikarddaniel in #346
• update date for release by @danilodileo in #347
• Release v1.1.0 by @danilodileo in #334

New Contributors

• @maxulysse made their first contribution in #264

Full Changelog: 1.0.1...1.1.0

This release fixes two important bugs in 1.0.0:

• The --eukulele_db parameter did not work and gave syntax error. Besides fixing this issue, it is now not possible to use more than one database per run.
• User provided assemblies specified with --assembly that were not gzipped were overwritten. This should now be fixed.

Release of nf-core/metatdenovo version 1.0.0