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paired analysis in SUPPA

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#194 In nf-core/rnasplice;

· albamasmalavila opened on May 21, 2026

Specification of strandedness when starting with BAMs

enhancementNew feature or requestNew feature or request

Status: Open.

#184 In nf-core/rnasplice;

· albamasmalavila opened on Dec 15, 2025

support for long-read rnaseq

enhancementNew feature or requestNew feature or request

Status: Open.

#181 In nf-core/rnasplice;

· apsteinberg opened on Aug 24, 2025

Summary.txt with only zeros/ rMATS_result_FDR.txt not created - NO ERROR MESSAGE

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#179 In nf-core/rnasplice;

· mlbonatelli opened on Jul 3, 2025

no need to remove rRNA ?

enhancementNew feature or requestNew feature or request

Status: Open.

#176 In nf-core/rnasplice;

· hites77 opened on Jun 9, 2025

Option to run the pipeline with a subset a sample without running again Preprocessing, Alignment and quantification

enhancementNew feature or requestNew feature or request

Status: Open.

#172 In nf-core/rnasplice;

· ecapriotti opened on Apr 11, 2025

Global parameter for setting max intron length

enhancementNew feature or requestNew feature or request

Status: Open.

#169 In nf-core/rnasplice;

· KTMD-plant opened on Feb 28, 2025

Add processing of sample names consisting only of numbers

enhancementNew feature or requestNew feature or request

Status: Open.

#165 In nf-core/rnasplice;

· ValentineObrezanenko opened on Dec 18, 2024

Checking contrast file fails although the correct header seems to be present

bugSomething isn't workingSomething isn't working

Status: Open.

#159 In nf-core/rnasplice;

· tomsing1 opened on Oct 20, 2024

Error "reached CPU time limit"

enhancementNew feature or requestNew feature or request

Status: Open.

#158 In nf-core/rnasplice;

· ValentineObrezanenko opened on Oct 15, 2024

AWSmegatests are failing

bugSomething isn't workingSomething isn't working

Status: Open.

#144 In nf-core/rnasplice;

· FriederikeHanssen opened on Jun 21, 2024

ERROR ~ Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER (1)'

bugSomething isn't workingSomething isn't working

Status: Open.

#126 In nf-core/rnasplice;

· IanCodes opened on Feb 26, 2024