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mdtraj Public
Forked from mdtraj/mdtrajAn open library for the analysis of molecular dynamics trajectories
Python GNU Lesser General Public License v2.1 UpdatedSep 15, 2025 -
tip4p-d Public
Forked from paulrobustelli/Force-FieldsDE Shaw water model IDPs
UpdatedJan 27, 2025 -
ParmEd Public
Forked from ParmEd/ParmEdParameter/topology editor and molecular simulator
Python UpdatedSep 21, 2024 -
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stat37710_ML_notebooks Public
My solutions to UChicago ML coursework
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upside-docking Public
Forked from sosnicklab/upside-mdCoarse-grained molecular dynamics for protein physics. Docking version.
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ProDy Public
Forked from prody/ProDyA Python Package for Protein Dynamics Analysis
Python Other UpdatedNov 5, 2020 -
contact_map Public
Forked from dwhswenson/contact_mapContact map analysis for biomolecules; based on MDTraj
Python GNU Lesser General Public License v2.1 UpdatedNov 11, 2019
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