Tags: nipy/nipype
Tags
1.4.0 (December 20, 2019) Full changelog: https://github.com/nipy/nipype/milestone/37?closed=1 * FIX: Mark strings containing regex escapes as raw (#3106) * ENH: Pacify DeprecationWarnings caused by nibabel 3 pre-release (#3099) * ENH: Allow Nipype configuration directory to be specified with NIPYPE_CONFIG_DIR environment variable (#3073) * ENH: Add options and outputs to ``fsl.Eddy`` interface (#3034) * ENH: Add skull_file output to fsl.BET interface (#3095) * RF: Drop various remaining compatibilities for Python < 3.5 (#2831) * DOC: Add Python 2 statement to README, reference maintenance branch in CONTRIBUTING (#3115) * DOC: Miss underline before cmd in example code (#3107) * STY: Black (#3096) * MNT: Set junit_family to suppress pytest warning (#3111) * MNT: Fix Dorota Jarecka ORCID (#3100) * MNT: Drop Python 2 support (#2654)
1.3.0 (November 11, 2019) Full changelog: https://github.com/nipy/nipype/milestone/34?closed=1 * FIX: Fixed typo in QwarpInputSpec Trait description (#3079) * FIX: Restore ``AFNICommand._get_fname``, required by some interfaces (#3071) * FIX: Remove asynchronous chdir callback (#3060) * FIX: Minimize scope for directory changes while loading results file (#3061) * ENH: Minimize the number of calls to ``_load_results`` when populating inputs (#3075) * ENH: Refactor savepkl/loadpkl - add a window for loadpkl to wait for the file (#3089) * ENH: Add "ExportFile" interface as simple alternative to "DataSink" (#3054) * ENH: Allow nipype.cfg in cwd to be read even if ~/.nipype does not exist (#3072) * ENH: Add precommit information for contributors and pre-commit style (#3063) * ENH: Delay etelemetry for non-interactive sessions, report bad versions (#3049) * ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (#30) * RF: Provide functions to augment old Path.mkdir, Path.resolve methods (#3050) * RF: Redirect nipype.workflows to niflow.nipype1.workflows (#3067) * TST: Skip dcm2niix test if data fails to download (#3059) * TST: dcm2niix test fix (#3058) * MAINT: Drop Python 3.4 support (#3062) * CI: ``make specs`` on Travis (#3066)
1.3.0-rc1 Release candidate for Nipype 1.3.0, released off-schedule to enable testing and allow downstream projects to move off of 1.2.3. Final release scheduled for Monday, October 28. Full changelog: https://github.com/nipy/nipype/milestone/34?closed=1 * FIX: Restore ``AFNICommand._get_fname``, required by some interfaces (#3071) * FIX: Remove asynchronous chdir callback (#3060) * FIX: Minimize scope for directory changes while loading results file (#3061) * ENH: Add precommit information for contributors and pre-commit style (#3063) * ENH: Delay etelemetry for non-interactive sessions, report bad versions (#3049) * ENH: Run memoized check_version at REPL import, Node/Workflow/Interface init (#30) * RF: Provide functions to augment old Path.mkdir, Path.resolve methods (#3050) * RF: Redirect nipype.workflows to niflow.nipype1.workflows (#3067) * TST: Skip dcm2niix test if data fails to download (#3059) * TST: dcm2niix test fix (#3058) * MAINT: Drop Python 3.4 support (#3062) * CI: ``make specs`` on Travis (#3066)
1.2.3 (September 23, 2019) Python 1.2.3 will be the last version to support Python 3.4. Full changelog: https://github.com/nipy/nipype/milestone/35?closed=1 * FIX: Patch Path.mkdir for Python 2 (#3037) * FIX: Drop deprecated message argument to ``FileNotFoundError`` (#3035) * FIX: Handle NIFTI extensions in ``afni.Qwarp`` (#3028) * FIX: Disallow returning ``None`` in ``pipeline.utils.load_resultfile`` (#3023) * ENH: Allow afni.CatMatvec to accept empty string opkeys (#2943) * ENH: Add ``mrrtrix3.MRResize`` interface (#3031) * ENH: Add version check / telemetry to Nipype (#3027) * ENH: Update MCFLIRT outputs for FSL 6+ (#3029) * ENH: Lightweight node cache checking (#3026) * ENH: Avoid loading result from file when writing reports (#3024) * ENH: replace portalocker with filelock (#3025) * MAINT: Set minimum yapf for `checkspecs` to 0.27 (#3033)
1.2.2 (September 07, 2019) Full changelog: https://github.com/nipy/nipype/milestone/33?closed=1 * FIX: Ensure ``loadpkl`` returns a not None value (#3020) * FIX: ``loadpkl`` failed when pklz file contained versioning info (#3017) * FIX: Update mne.WatershedBEM command line (#3007) * FIX: Specify correct stop criterion flag in PETPVC (#3010) * ENH: add interface for AFNI 3dTsmooth (#2948) * ENH: Additional arguments to ANTs N4BiasFieldCorrection (#3012) * ENH: Add ``--rescale-intensities`` and name_source to N4BiasFieldCorrection (#3011) * ENH: Add index_mask_file input to ImageStats (#3005) * RF: Remove versioning from loadpkl (#3019) * MAINT: Add ``python_requires`` to package metadata (#3006)
1.2.1 (August 19, 2019) Full changelog: https://github.com/nipy/nipype/milestone/32?closed=1 * FIX: Resolve/rebase paths from/to results files (#2971) * FIX: Use ``load_resultfile`` when loading a results pickle (#2985) * FIX: Incorrect extension identified when checking ``File`` traits (#2987) * FIX: Correctly pickle ``OuputMultiObject`` traits (#2983) * FIX: Improve output handling in DWIDenoise and DWIBiasCorrect (#2978) * FIX: Docker build (#2963) * FIX: Remove '=' signs from EddyQuad argument specifications (#2941) * FIX: Set input model to bedpostx for camino.TrackBedpostxProba (#2947) * FIX: Allow ``max_sh``not to be set (auto mode) (#2940) * ENH: Update mrtrix reconst.py EstimateFOD max_sh to be able to accept list (#2990) * ENH: Let ``indirectory`` handle ``nipype.utils.filemanip.Path`` (#2989) * ENH: Add resolve/rebase ``BasePath`` traits methods & tests (#2970) * ENH: Modify ``Directory`` and ``File`` traits to get along with pathlib (#2962) * REF: Update nipype2boutiques script (#2894) * TST: Parametrize JoinNode expansion tests over config ``needed_outputs`` (#2981) * MAINT: Pin lxml<4.4.0 for Python 3.4 (#2980) * MAINT: Refactor ``aggregate_outputs`` for readability (#2969) * MAINT: Bump neurodocker version (#2965) * MAINT: Various minor improvements to complement previous PR (#2964) * MAINT: Sort dependencies alphabetically (#2961)
1.2.0 (May 09, 2019) Full changelog: https://github.com/nipy/nipype/milestone/31?closed=1 * FIX: Parsing of filename in AlignEpiAnatPy when filename does not have + (#2909) * FIX: Import nibabel reorientation bug fix (#2912) * FIX: Update FNIRT outputs for warped_file log_file to include cwd (#2900) * FIX: Sort conditions in bids_gen_info to ensure consistent order (#2867) * FIX: Some traits-5.0.0 don't work with Python 2.7 (#1) * ENH: CompCor enhancement (#2878) * ENH: Do not override caught exceptions with FileNotFoundError from unfinished hashfile (#2919) * ENH: More verbose description when a faulty results file is loaded (#2920) * ENH: Add all DIPY workflows dynamically (#2905) * ENH: Add mrdegibbs and dwibiascorrect from mrtrix3 (#2904) * TEST: Fix CI builds (#2927) * MAINT: Reduce deprecation warnings (#2903)
1.1.9 (February 25, 2019) Full changelog: https://github.com/nipy/nipype/milestone/30?closed=1 * FIX: Make positional arguments to LaplacianThickness require previous argument (#2848) * FIX: Import math and csv modules for bids_gen_info (#2881) * FIX: Ensure outputs can be listed in camino.ProcStreamlines by defining instance variable (#2739) * ENH: Allow afni.MaskTool to take multiple input files (#2892) * ENH: Add flags dictionary input to spm.Level1Design (#2861) * ENH: Threshold stddev once only in TSNR (#2883) * ENH: Add workbench.CiftiSmooth interface (#2871) * DOC: Replace initialism typo in comment with intended phrase (#2875) * DOC: Fix typos in ANTs Registration input documentation (#2869)