1.8.0 (May 10, 2022)

New feature release in the 1.8.x series.

The primary new features are a batch of PETSurfer interfaces.

This release drops support for Python < 3.7 and Numpy < 1.17, triggering a minor version bump.
Additionally, matplotlib < 2.1 will stop working with some interfaces, but more recent versions
will start working.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.8.0?closed=1>`__)

  * FIX: Change plt.hist() argument from deprecated 'normed' to 'density' (#3455)
  * ENH: Add random seed option to ANTs registration (#3463)
  * ENH: Add PETsurfer interfaces (#3437)
  * ENH: Add Text2Vest and Vest2Text interfaces (#3447)
  * REF: Optimize ICC_rep_anova with a memoized helper function (#3454)
  * REF: Rearranging matmul order and using hermitian flag in ICC_rep_anova  (#3453)
  * MNT: Drop distutils (#3458)
  * CI: Cache test data (#3459)

1.7.1 (April 05, 2022)

Full changelog: https://github.com/nipy/nipype/milestone/1.7.1?closed=1

* FIX: Allow ``ConvertScalarImageToRGBInputSpec.mask_file`` to be ``"none"`` (#3364)
* FIX: Use a more robust strategy for detecting ANTs version (#3444)
* FIX: Retry renaming pkl(z) files on failure (#3404)
* FIX: Escape metacharacters when parsing dcm2niix outputs (#3417)
* FIX: Import error for nipype.interfaces.dipy.base (#3414)
* FIX: ``ValueError`` when using ``ResourceMonitor`` (#3419)
* FIX: Improve error handling of ``CommandLine`` interfaces (#3395)
* FIX: Bugs in ApplyVDM interface (#3396)
* ENH: Add MRTrix3 interfaces (pared-down gh-3426) (#3445)
* ENH: Enable BidsDataGrabber to load saved layouts (#3421)
* ENH: ROBEX interface (#3443)
* ENH: Include several operations to ANTs's ImageMath interface, including ReplicateImage and ReplicateDisplacement (#3435)
* ENH: Add "GenericLabel" to antsRegistration interpolation option. (#3424)
* ENH: added Apply VDM functionality to FieldMap SPM interface (#3394)
* DOC: Side bar and main page fixes (#3397)
* TEST: Allow SVD columns to flip sign (#3405)
* MNT: rename dipy ``move_streamlines`` to ``transform_tracking_output`` (#3412)
* MNT: Test on Python 3.10 (#3438)
* MNT: Added ORCID iD (#3436)

1.7.0 (October 20, 2021)

Full changelog: https://github.com/nipy/nipype/milestone/1.7.0?closed=1

  * FIX: Make ants.LaplacianThickness output_image a string, not file (#3393)
  * FIX: coord for mrconvert (#3369)
  * FIX: ``antsRegistration`` allows the ``restrict_deformation`` to be float  (#3387)
  * FIX: Also allow `errno.EBUSY` during `emptydirs` on NFS  (#3357)
  * FIX: Removed exists=True from MathsOutput (#3385)
  * FIX: Extension not extensions, after pybids v0.9 (#3380)
  * ENH: Add CAT12 SANLM denoising filter (#3374)
  * ENH: Add expected steps for FreeSurfer 7 recon-all  (#3389)
  * ENH: Stop printing false positive differences when logging cached nodes  (#3376)
  * ENH: Add new flags to MRtrix/preprocess.py (DWI2Tensor, MRtransform)  (#3365)
  * ENH: ``verbose`` input should not be hashed in ``ants.Registration`` (#3377)
  * REF: Clean-up the BaseInterface ``run()`` function using context (#3347)
  * DOC: Fix typo in README  (#3386)
  * STY: Make private member name consistent with the rest of them (#3346)
  * MNT: Simplify interface execution and better error handling of ``Node`` (#3349)
  * MNT: Add user name and email to Docker to appease git/annex/datalad (#3378)
  * CI: Update CircleCI machine image  (#3391)

1.6.1 (June 16, 2021)

Bug-fix release in the 1.6.x series.

Full changelog: <https://github.com/nipy/nipype/milestone/1.6.1?closed=1

  * FIX: Set DistributedPluginBase.refidx type correctly (#3340)
  * FIX: change fsl interface randomise --f_only to --fonly for #3322 (#3325)
  * FIX: BET raising "No image files match: ..." with very long file names (#3309)
  * FIX: Update SmoothEstimateOutputSpec resels description (#3316)
  * ENH: Adds interfaces for MRtrix utils shconv and sh2amp (#3280)
  * ENH: Interface for R (#3291)
  * ENH: Add CAT12 interfaces (#3310)
  * ENH: AFNI 3dNetCorr as afni.NetCorr (#3263)
  * ENH: Skip newline before Python call in batch submission to facilitate containerized runs (#3297)
  * ENH: Add new dwifslpreproc interface for MRtrix3 (#3278)
  * REF: Cache nodes in workflow to speed up construction, other optimizations (#3331)
  * DOC: Fixed Developer Setup Link in install.rst (#3330)
  * MNT: Blacklist Dipy 1.4.1 (#3335)
  * MNT: Drop support for numpy < 1.15.3 (#3284)
  * CI: Build docker images with Python 3.8 (#3287)
  * CI: Drop Circle doc builds (#3338)
  * CI: Drop Travis (#3332)
  * CI: Build docker images with Python 3.8 (#3287)
  * CI: Add specs and style checks (#3321)
  * CI: Move from Travis to GitHub actions (#3318)

1.6.0 (November 28, 2020)

New feature release in the 1.6.x series.

In addition to the usual bug fixes, significant reductions were made
in workflow startup costs.

  * FIX: Canonicalize environment dicts to strings in Windows (#3267)
  * FIX: Purge deprecated exception content accesses (#3272)
  * FIX: Handle changes in CLI structure of mrtrix3.DWIBiasCorrect (#3248)
  * FIX: EpiReg changed to not list certain outputs when 'wmseg' input is specified (#3265)
  * FIX: CI issues (#3262)
  * FIX: SPM SliceTiming must accept either Int or float for ref_slice and sli… (#3255)
  * FIX: Raise version error when using ``-g`` with ``antsAI`` < 2.3.0 (#3256)
  * FIX: No longer depending on pydotplus (networkx >=2.0 update) (#3251)
  * FIX: ANTs' utilities revision - bug fixes and add more operations to ``ants.ImageMath`` (#3236)
  * ENH: Handle unavailable traits due to version differences (#3273)
  * ENH: Optimize workflow.run performance (#3260)
  * DOC: Remove myself (@mr-c) from the zenodo metadata (#3271)

1.5.1 (August 16, 2020)

Bug-fix release in the 1.5.x series.

This release includes small updates to ANTs utilities that lie somewhere
between bug fixes and enhancements.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.1?closed=1>`__)

  * FIX: Warn for min/max_ver traits when tool version can't be parsed (#3241)
  * FIX: Serialize all interface arguments when exporting workflows (#3240)
  * FIX: Permit identity transforms in list of transforms given to ants.ApplyTransforms (#3237)
  * FIX: ANTs' utilities revision - bug fixes and add more operations to ``ants.ImageMath`` (#3236)
  * DOC: Skip BIDSDataGrabber doctest if pybids is missing (#3224)

1.5.0 (June 03, 2020)

New feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package:
`niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)

  * FIX: volterra_expansion_order documentation error (#3213)
  * FIX: BET incorrect output paths (#3214)
  * FIX: Terminal output in ``report.rst`` spreads one line per character (#3220)
  * FIX: Allow parsing freesurfer 7 version string (#3216)
  * FIX: Use PackageInfo to get NiftyReg version (#3194)
  * FIX: Partial rollback of N4BiasFieldCorrection (#3188)
  * FIX: ANTs' tools maintenance overhaul (#3180)
  * FIX: load_resultfile crashes if open resultsfile from crashed job (#3182)
  * FIX: FSL model.py make multiple F-tests (#3166)
  * ENH: Restore ants.legacy interfaces (#3222)
  * ENH: Add ``"TruncateImageIntensity"`` operation to ``ants.utils.Image.Math`` (#3210)
  * ENH: SPM NewSegment multi-channel segmentation (#3162)
  * ENH: Add reverse-ordered transform lists to ants.Registration outputs (#3192)
  * ENH: Improve workflow connect performance (#3184)
  * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (#3176)
  * ENH: Detect values for EulerNumber interface (#3173)
  * ENH: Remove examples from repository (#3172)
  * TEST: Clean up tests (#3195)
  * TEST: Mock terminal output before testing changing default value (#3193)
  * REF: make invocations of python and pytest consistent with the one used/desired python (#3208)
  * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (#3177)
  * REF: Removed all uses of numpy_mmap (#3121)
  * DOC: Sphinx 3 compatibility (#3206)
  * DOC: Update links, typos in contributing guide (#3160)
  * DOC: Update SelectFiles docstring to match actual behavior (#3041)
  * DOC: Updated .zenodo.json file (#3167)
  * DOC: Update .zenodo.json (#3165)
  * MNT: Permit recent nilearns (#2841)
  * MNT: Test Python 3.8 (#3154)
  * MNT: Restore ReadTheDocs (#3207)
  * MNT: Update Zenodo ordering based on commit count (#3169)

1.5.0-rc1

Release candidate for the new feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package:
`niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)

  * FIX: Partial rollback of N4BiasFieldCorrection (#3188)
  * FIX: ANTs' tools maintenance overhaul (#3180)
  * FIX: load_resultfile crashes if open resultsfile from crashed job (#3182)
  * FIX: FSL model.py make multiple F-tests (#3166)
  * ENH: Improve workflow connect performance (#3184)
  * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (#3176)
  * ENH: Detect values for EulerNumber interface (#3173)
  * ENH: Remove examples from repository (#3172)
  * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (#3177)
  * REF: Removed all uses of numpy_mmap (#3121)
  * DOC: Update links, typos in contributing guide (#3160)
  * DOC: Update SelectFiles docstring to match actual behavior (#3041)
  * DOC: Updated .zenodo.json file (#3167)
  * DOC: Update .zenodo.json (#3165)
  * MNT: Update Zenodo ordering based on commit count (#3169)

1.4.2 (February 14, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/1.4.2?closed=1

* FIX: Allow ``fsl.MultipleRegressDesign`` to create multiple F-tests (#3166)
* FIX: Reliably parse SGE job IDs in the presence of warnings (#3168)
* FIX: Move TraitType import, handle API change for NoDefaultSpecified (#3159)

1.4.1 (January 27, 2020)

Full changelog: https://github.com/nipy/nipype/milestone/1.4.1?closed=1

* FIX: DataSink to S3 buckets (#3130)
* FIX: improve version checking for nodes of workflows (#3152)
* FIX: mapnode to generate result file when crashes in single node mode (#3143)
* FIX: Can't seem to import workflows from niflows in CircleCI (#3134)
* FIX: Repair aftermath of docs refactor (#3133)
* FIX: change ANTS number_of_time_steps from Float to Int (#3118)
* DOC: Revise generation of examples to work in RTD (#3132)
* DOC: Bring examples generation back to ``doc/conf.py`` (#3131)
* DOC: Documentation overhaul (#3124)
* DOC: Deep revision of documentation building (#3120)
* DOC: Deduplicate code for Sphinx's APIdoc generation (#3119)
* MNT: Update requirements.txt post-1.4 (#3153)