Lists (29)
Advancing Julia
Repos that advance Julia as a compelling scientific programming language.AI-Assisted Engineering
Programming will never be the same.Bioinformatics
"Bioinformatics is terrible. Everybody knows bioinformatics is terrible...it’s not a good situation that we’re in."Biology in the Frontend
Interactive simulations, visualizations, and demos served in the browser.Command-line Utilities
Future-facing command-line tools written in innovative languages or that raise the bar in some other way.Data Visualization
Know your data by seeing it.Design as Code
Functional Programming
Writing composable, refactorable, and robust code with an FP paradigmGenomic epidemiology🦠🧬
Get started in Bioinformatics
Looking for inspiration to get started with making sense of noisy biological data? These repos punch above their weight.GIS
Spatial statistics, cartography, and other spatially explicit methodsGleam is cool
Glimpses of Jai
Early looks at the Jai programming language, which remains in closed betaGo in Bioinformatics
Tools built in Go that can be interfaced with in the command line, or in Go source code.i use neovim, btw
we don't talk about vscode in this householdLearning Me a Haskell
Finally giving in and learning Haskell—I may never be the sameMetagenomics is hard :(
but fun?Python as a Glue Language
Python is beautiful...but slow. These tools help bring out its best side: as an elegant glue language connecting faster pieces of software.R in Science
"The best thing about R is it was designed by statisticians. The worst thing about R is it was designed by statisticians."Reading
Open-source books and docs distributed on GitHubRust in Bioinformatics (and Beyond!)
Tools built in Rust that can be interfaced with in the command line, or in Rust source code.Scientific Reproducibility
Tools that make doing reproducible science—a very difficult task!—easier.Simulation & Testing
Software for Biodiversity
Software developed to help understand and solve the biodiversity crisis and advance our understanding of ecology and evolution in general.Standards for Excellent Programs
TUIs
I love TUIs and I don't care who knows itTurns out your app is a database
Repos that are explicitly--or accidentally--database projects.TypeScript Eats the World
We all give into TypeScript eventually...Workflow Orchestration
Tools for deploying many steps of dataflow across a variety of infrastructuresStars
Run a command and report its process tree's CPU, memory, and I/O usage
Rust implementation of the Resonate algorithm for low-latency spectral analysis, with Python and WebAssembly bindings
An opinionated app for working with genomic data.
Completion-based I/O for Rust. No runtime, no hidden tasks.
Hiisi is a proof of concept libSQL written in Rust following TigerBeetle-style with deterministic simulation testing.
List of projects that provide terminal user interfaces
A GlobalProtect VPN client for Linux, written in Rust, based on OpenConnect and Tauri, supports SSO with MFA, YubiKey, and client certificate authentication, etc.
A terminal OpenTelemetry viewer inspired by otel-desktop-viewer
Spiritual successor to picard for sequencing qc
A SQL extension for declarative data visualisation based on the Grammar of Graphics.
✦ A token-based theme engine for Rust TUI applications
A Rust reimplementation of the MRtree algorithm for reconciling clustering labels from multiple resolutions into a consistent cluster hierarchy
Glass-HQ / Glass
Forked from zed-industries/zedBrowse. Edit. Ship. – Glass unifies your browser, and development environment into one app.
Playing around with sens/spec measurements for simulated stuff
Scheduling infrastructure for absolutely everyone.
A composable overlay widget for Ratatui with drawers, modals, popovers, and toasts from a single configurable primitive.
Open source framework for building robust type-safe distributed systems with declarative infrastructure
Class materials for a distributed systems lecture series
Visualize the bias of NtHash for consecutive k-mers
A portable open-source operating system for agents. ~6 ms coldstarts, 32x cheaper than sandboxes. Powered by WebAssembly and V8 isolates.