Commits

Commits on Apr 24, 2022

Update for declunkified biolibc VCF API
Jason Bacon
committed
f67f5aa

Commits on Apr 5, 2022

Update for bl_sam_init() API change
Jason W. Bacon
committed
16ae5d5

Commits on Mar 23, 2022

Update scientific ports count
Jason W. Bacon
committed
795f607

Commits on Mar 10, 2022

README.md: Cite repology.org
Jason Bacon
committed
0662c29

Commits on Feb 27, 2022

CentOS -> Linux for test platforms cited
Jason Bacon
committed
b8ab03c
Use github auto-pkgsrc-setup link
Jason Bacon
committed
277cf57

Commits on Feb 25, 2022

Update README for new PREFIX and LOCALBASE defaults
Jason Bacon
committed
4f55a12
Standardize on PREFIX=../local, LOCALBASE=${PREFIX}
Jason Bacon
committed
b3b4bfc

Commits on Feb 8, 2022

Use -isystem to reduce noise from -MM
Jason Bacon
committed
746b1ef
version.sh: Note need to set VERSION in ports env
Jason Bacon
committed
727ab3a

Commits on Jan 24, 2022

cave-man-install.sh: Check . for libs
Jason Bacon
committed
f391fd7

Commits on Jan 15, 2022

README: Clarify accessor macros and mutator functions
Jason Bacon
committed
8a1291e

Commits on Jan 11, 2022

README: Add install from source instructions
Jason Bacon
committed
8b8196f

Commits on Jan 8, 2022

Update for biolibc API change
Jason Bacon
committed
37ed497

Commits on Dec 12, 2021

New version detection script using git or package build env
Jason Bacon
committed
22296d4
New version detection script using git or package build env
Jason Bacon
committed
503c728

Commits on Dec 8, 2021

Update for biolibc API change
Jason Bacon
committed
a7e0f2c

Commits on Dec 6, 2021

Add program name to --version output
Jason Bacon
committed
bc728a5

Commits on Dec 4, 2021

Bump version
Jason Bacon
committed
1153b43

Commits on Dec 3, 2021

Up max buffered alignments to 131072 based on SRA sample
Jason Bacon
committed
a069d1a
Document recommended alignment filtering
Jason Bacon
committed
c54872c
Reduce max buffered alignments assuming use of samtools -F 0xF0C
Jason Bacon
committed
8944220
Update for sam_buff API change
Jason Bacon
committed
9ac5a00
Add --version flag
Jason Bacon
committed
0773e2b

Commits on Dec 2, 2021

Require at least a field header starting with #CHROM
Jason Bacon
committed
9858fba

Commits on Sep 16, 2021

README.md: Update science port count
Jason Bacon
committed
26aff3c

Commits on Sep 12, 2021

Fix printf placeholders for uint64_t vs size_t

Jason Bacon
authored and
Jason Bacon
committed
7a47c2e

Commits on Sep 11, 2021

Fix CMD_MAX to accommodate max filename size

Jason Bacon
authored and
Jason Bacon
committed
c2166c1

Commits on Aug 14, 2021

Add xtend/string.h for Linux strlcpy()
Jason Bacon
committed
2073297

Commits on Aug 13, 2021

Update for new libxtend API
Jason Bacon
committed
f949826

Commits on Jul 27, 2021

Improve vcf_stats API for eventual factoring
Jason Bacon
committed
07d8cad

Commits on Jul 26, 2021

Clean up vcf stats API
Jason Bacon
committed
9af32c1

Commits on Jul 25, 2021

Better test script interaction
Jason Bacon
committed
cdb7f4f

Commits on Jul 23, 2021

Update for new biolibc accessors/mutators
Jason Bacon
committed
67ef5b6

Commits on Jul 19, 2021

Remove redundant vcf init macro
Jason Bacon
committed
0449a86