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Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dime…
Build unbiased anatomical templates from individual images
Tool for the creation, validation and transfer of neuroscience project folders.
Mix-and-match computer vision tools for your animal behaviour analysis
A Python toolbox for analysing animal body movements across space and time
A metadata model capturing Spatial Anchoring of Neuroscience Data Structures, including brain atlas definitions.
napari: a fast, interactive, multi-dimensional image viewer for python
Shared general purpose tools for the BrainGlobe project
A package to manage electrophysiology analysis.
A Python interface to access neuroanatomical atlases
Home website of the Neuroinformatics Unit
aqt: Another (unofficial) Qt CLI Installer on multi-platforms
Automated 3D cell detection in very large images
Covering how to build electrophysiology pipelines with SpikeInterface
(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.
A Python package to download neuronal morphologies
Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
A napari plugin to render BrainGlobe atlases and associated data as layers.
Read and write files from the BrainGlobe neuroanatomy suite
Anatomical space conventions made easy.
Segmentation of anatomical structures in a common coordinate space
Rendering anatomical heatmaps with brainrender and matplotlib
A Python package to visualise neuroanatomical data in atlas space
Automated 3D brain registration with support for multiple species and atlases.
A napari plugin for stitching large tiled 3D imaging datasets
Registration to BrainGlobe atlases in napari using Elastix
Python package template for new research software projects