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napari: a fast, interactive, multi-dimensional image viewer for python
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dime…
aqt: Another (unofficial) Qt CLI Installer on multi-platforms
A Python package to visualise neuroanatomical data in atlas space
Install Qt on your Github Actions workflows with just one simple action
Automated 3D cell detection in very large images
A Python toolbox for analysing animal body movements across space and time
A Python interface to access neuroanatomical atlases
Automated 3D brain registration with support for multiple species and atlases.
Load 3D meshes from neuroanatomy atlases into Blender via brainglobe API
Collecting guidance, documents, examples, templates for open-source software project, such as on governance, roadmaps, contributing, license, code of conduct
Adaptive Riemannian Optimization for Multi-Scale Diffeomorphic Registration
Python package template for new research software projects
Rendering anatomical heatmaps with brainrender and matplotlib
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
Segmentation of anatomical structures in a common coordinate space
Utility to create a basic Python project structure with tests, CI etc.
Tool for the creation, validation and transfer of neuroscience project folders.
Registration to BrainGlobe atlases in napari using Elastix
A package to manage electrophysiology analysis.
A napari plugin to render BrainGlobe atlases and associated data as layers.
Efficient cell detection in large images using cellfinder in napari
Mix-and-match computer vision tools for your animal behaviour analysis
Standalone cellfinder cell detection algorithm
Lightweight data specification for systems neuroscience, inspired by BIDS.
A Python package to download neuronal morphologies
Automated 3D brain registration in napari with support for multiple species and atlases.