Highlights
- Pro
-
SINGER Public
Forked from popgenmethods/SINGERSampling and inference of genealogies with recombination
C++ MIT License UpdatedJun 9, 2026 -
-
SLiM Public
Forked from MesserLab/SLiMSLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platf…
C++ GNU General Public License v3.0 UpdatedJun 3, 2026 -
biorxiv-badge Public
Generate reusable GitHub README badges for bioRxiv preprints
-
stdpopsim Public
Forked from popsim-consortium/stdpopsimA library of standard simulation models for msprime
Python GNU General Public License v3.0 UpdatedMay 30, 2026 -
pg_gpu-paper-analysis Public
Reproducibility scripts and figures for the pg_gpu paper.
Python MIT License UpdatedMay 19, 2026 -
-
phast Public
Forked from CshlSiepelLab/phastPHAST
C BSD 3-Clause "New" or "Revised" License UpdatedApr 24, 2026 -
sliding_hka Public
Sliding-window HKA diagnostic for aligned coding sequences (Kreitman & Hudson 1991)
-
-
-
autoresearch Public
Forked from karpathy/autoresearchAI agents running research on single-GPU nanochat training automatically
-
crabml Public
Fast phylogenetic model fitting and hypothesis tests of codon-based models using a python+rust structure 🦀
-
-
alen Public
Forked from jakobnissen/alenSimple terminal alignment viewer
Rust MIT License UpdatedJan 22, 2026 -
-
tskit Public
Forked from tskit-dev/tskitThe tree sequence toolkit
Python MIT License UpdatedJan 3, 2026 -
-
popgen-npe Public
Forked from kr-colab/popgen-npeSnakemake workflow for popgensbi
Jupyter Notebook MIT License UpdatedDec 1, 2025 -
-
msprime Public
Forked from tskit-dev/msprimeA reimplementation of Hudson's classical ms simulator for modern data sets.
Python GNU General Public License v3.0 UpdatedSep 18, 2025 -
analysis2_manuscript Public
Forked from popsim-consortium/analysis2_manuscriptmanuscript repo for the paper describing selection additions and analysis
TeX UpdatedAug 1, 2025 -
-
Demographic_Inference Public
Forked from ak1376/Demographic_InferenceJupyter Notebook UpdatedJun 11, 2025 -
-
-
-
-
sweetPotatoPie Public
Gail Garlick's Sweet Potato Pie Recipe
Creative Commons Zero v1.0 Universal UpdatedNov 28, 2024 -
analysis2 Public
Forked from popsim-consortium/analysis2Analysis for the second consortium paper.
Jupyter Notebook UpdatedNov 11, 2024