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trackastra Public
Forked from weigertlab/trackastraPython BSD 3-Clause "New" or "Revised" License UpdatedApr 1, 2026 -
tukra Public
Convenience scripts for evaluating popular deep learning-based methods for biomedical image segmentation
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napari-omero Public
Forked from ome/napari-omeroBrowse your OMERO database from within napari.
Python GNU General Public License v2.0 UpdatedDec 3, 2025 -
anyup Public
Forked from wimmerth/anyupRepository of the paper "AnyUp: Universal Feature Upsampling".
Jupyter Notebook Creative Commons Attribution 4.0 International UpdatedNov 27, 2025 -
deNBI-hackathon-2025-OMERO Public
Forked from NFDI4BIOIMAGE/deNBI-hackathon-2025-OMERORepo for collecting matherial, tasks and issues for the OMERO deNBI Hackaton (2025)
UpdatedNov 24, 2025 -
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micro_sam-feedstock Public
Forked from conda-forge/micro_sam-feedstockA conda-smithy repository for micro_sam.
BSD 3-Clause "New" or "Revised" License UpdatedJun 6, 2025 -
computational-cell-analytics-home Public
Forked from constantinpape/computational-cell-analytics-homeA truly simple website template for academics
HTML BSD 2-Clause "Simplified" License UpdatedMay 23, 2025 -
spotiflow Public
Forked from weigertlab/spotiflowAccurate and efficient spot detection for microscopy data
Python BSD 3-Clause "New" or "Revised" License UpdatedMay 20, 2025 -
elf Public
Forked from constantinpape/elfUtils and convenience functions for large-scale bio-image analysis.
Python MIT License UpdatedMay 11, 2025 -
cellmap-segmentation-challenge Public
Forked from janelia-cellmap/cellmap-segmentation-challengeRepository of scripts to facilitate participation in CellMap's segmentation challenge. This includes downloading data, simple setups for training 2D and 3D models, workflows for prediction and post…
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 2, 2025 -
napari-dinoSim Public
Forked from AAitorG/napari-DINOSimThis repository provides DinoSim, a method that leverages the DINOv2 foundation model for zero-shot object detection and segmentation in bioimage analysis. DinoSim uses pretrained DINOv2 embeddings…
Jupyter Notebook MIT License UpdatedApr 2, 2025 -
featureforest Public
Forked from juglab/featureforestA napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 23, 2025 -
qupath-extension-sam Public
Forked from ksugar/qupath-extension-samQuPath extension for Segment Anything Model (SAM)
Java GNU General Public License v3.0 UpdatedMar 11, 2025 -
BiomedParse Public
Forked from microsoft/BiomedParseBiomedParse: A Foundation Model for Joint Segmentation, Detection, and Recognition of Biomedical Objects Across Nine Modalities
Jupyter Notebook Apache License 2.0 UpdatedJan 10, 2025 -
torch-em Public
Forked from constantinpape/torch-emDeep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
Jupyter Notebook MIT License UpdatedJan 2, 2025 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 19, 2024 -
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torch_em-feedstock Public
Forked from conda-forge/torch_em-feedstockA conda-smithy repository for torch_em.
BSD 3-Clause "New" or "Revised" License UpdatedDec 2, 2024 -
midl-website Public
Forked from MIDL-Conference/midl-websiteWebsite of the MIDL conference series
Makefile Creative Commons Attribution Share Alike 4.0 International UpdatedNov 29, 2024 -
Vim Public
Forked from hustvl/Vim[ICML 2024] Vision Mamba: Efficient Visual Representation Learning with Bidirectional State Space Model
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python-elf-feedstock Public
Forked from conda-forge/python-elf-feedstockA conda-smithy repository for python-elf.
BSD 3-Clause "New" or "Revised" License UpdatedJul 11, 2024 -
MedSAM Public
Forked from bowang-lab/MedSAMSegment Anything in Medical Images
Jupyter Notebook Apache License 2.0 UpdatedJun 9, 2024 -
fiftyone Public
Forked from voxel51/fiftyoneThe open-source tool for building high-quality datasets and computer vision models
Python Apache License 2.0 UpdatedFeb 18, 2024 -
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awesome-segment-anything Public
Forked from Hedlen/awesome-segment-anythingTracking and collecting papers/projects/others related to Segment Anything.
MIT License UpdatedSep 13, 2023 -
deepmind-research Public
Forked from google-deepmind/deepmind-researchThis repository contains implementations and illustrative code to accompany DeepMind publications
Jupyter Notebook Apache License 2.0 UpdatedFeb 4, 2023 -
website-content Public
Forked from DIAGNijmegen/website-contentThis repository stores all the content for the diag websites.
TeX MIT License UpdatedOct 22, 2022 -
probabilistic_unet Public
Forked from SimonKohl/probabilistic_unetA U-Net combined with a variational auto-encoder that is able to learn conditional distributions over semantic segmentations.
Jupyter Notebook Apache License 2.0 UpdatedOct 20, 2022 -
git-lfs Public
Forked from git-lfs/git-lfsGit extension for versioning large files
Go Other UpdatedApr 28, 2022
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