Your single pane of glass for real-time analytics into MySQL/MariaDB & ProxySQL

The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.

A JavaScript toolkit for working with chunked, compressed, n-dimensional arrays

Browser-based OME-ZARR microscopy viewer. Open local files, annotate, overlay segmentation labels, share deep links. GPU-accelerated, privacy-first, zero-install.

a place to work on a specification for skeletons

Batched GPU augmentations for 3D medical images, replacing MONAI's per-sample transforms with fused Triton kernels

Plot and explore data that is linked to images, with an embedded viewer

WebGL2 powered visualization framework

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.

This repository offer access to teaching material and useful resources for the YMIA - Python-Based Event Series.

Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow

This repository contains the code to train and evaluate TRIBE v2, a multimodal model for brain response prediction

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Ankh: Optimized Protein Language Model

ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

Large Language Models in Protein: A Comprehensive Survey

Distributed Task Queue (development branch)

Open Source Computer Vision Library

https://www.youtube.com/channel/UC34rW-HtPJulxr5wp2Xa04w?sub_confirmation=1

Multiple-choice microscopy pipeline

Running compute-intense parts of BigStitcher distributed

Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise

Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

ImgLib2/BDV implementation of Stitching for large datasets

Single-Frame Vignetting Correction for Post-Stitched-Tile Im-aging using VISTAmap (VIgnetted Stitched-Tile Adjustment using Morphological Adaptive Processing)

ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration