R's data.table package extends data.frame:

📍 Repel overlapping text labels away from each other in your ggplot2 figures.

📊 A universal enrichment tool for interpreting omics data

Accelerating ggplot2

Did you ever wish you could make scatter plots with cat shaped points? Now you can!

Raster geoms for ggplot2

A Toolbox for Spatial Transcriptomics Analysis

MSigDB gene sets for multiple organisms in a tidy data format

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

Linseed: LINear Subspace identification for gene Expresion Deconvolution

Use gene expression to predict phenotype sample information

COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R

Package to benchmark methods from decoupleR

NMF and complete deconvolution algorithm

Finding an Active Metabolic Module in Atom Transition Network

GAM-clustering: Metabolic Modules Derivig From RNAseq Data

❗ This is a modified version of the CRAN R package repository. WGCNA — Weighted Correlation Network Analysis

R package for BridgeDb

Web-service for omics-based identification of regulated metabolic modules in atom transition networks

Visualization of single cell RNA-seq data from tens of thousands of cells in real time

ifmo_ctlab_project