Genome modeling and design across all domains of life

The ViennaRNA Package

👩‍💻👨‍💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.

Molecular bio gamification

A beautiful, simple, clean, and responsive Jekyll theme for academics

Contains files for the deep learning in genomics primer.

My PhD thesis, “Investigating the link between tRNA and mRNA abundance in mammals”

Repository of my thesis "Understanding Random Forests"

k-mer learning materials

Statistical Rethinking Course for Jan-Mar 2023

📐 Jekyll theme for building a personal site, blog, project documentation, or portfolio.

A curated list of NLP resources focused on Transformer networks, attention mechanism, GPT, BERT, ChatGPT, LLMs, and transfer learning.

A curated collection of Nextflow implementation patterns

Comprehensive list of color palettes available in R ❤️🧡💛💚💙💜

RNAseq analysis notes from Ming Tang

The Leek group guide to genomics papers

The complete sequence of a human genome

Short lessons from FAS Informatics coffee hour

Specifications of SAM/BAM and related high-throughput sequencing file formats

Genome Assembly and Annotation Service code

A DSL for data-driven computational pipelines

Useful bash one-liners for bioinformatics.

SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.

Pipeline to fetch metadata and raw FastQ files from public databases

YSDA course in Natural Language Processing

A resource for learning about Machine learning & Deep Learning

Nextflow training material for introductory tutorial

A repo for open resources & information for people to succeed in PhD in CS & career in AI / NLP