Rethinking Vim as a tool for writing

Distributed single-cell data analysis.

single-cell latent diffusion model

A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

Comparing random prospects by Stochastic Dominance

A community trust management system based on explicit vouches to participate.

modeling genetic perturbations in human CD4+ T cells

LLM inference in C/C++

A framework to estimate uncertainty in single-cell response prediction. (NeurIPS 2025)

Stack is a single-cell foundation model that enables in-context learning at inference time.

PyHessian is a Pytorch library for second-order based analysis and training of Neural Networks

A fast native Rust Mermaid diagram renderer. No browser required. 500-1000x faster than mermaid-cli.

Analysis of Single Cell Expression, Normalization and Differential expression

R toolkit for single cell genomics

https://interp-extrap-perturb.readthedocs.io

A modular framework for multimodal cross-cell-type transcriptional regulation models

GeneCompass

Developer-friendly OSS embedded retrieval library for multimodal AI. Search More; Manage Less.

Minimalist ML framework for Rust

Exploring near-critical behaviours through the lens of sheaf cohomology

A minimalist design exploration

Full spectrum sheaf neural network over arbitrary CW complexes.

Implementation of Sheaf Neural Networks: https://arxiv.org/abs/2012.06333

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Benchmarks for classification of genomic sequences