Lists (7)
Stars
A markdown native slides tool for academics building with agents.
MirMachine, a command line tool to detect microRNA homologs in genome sequences.
Graph Layout and Visualization for GFA Files with FM3 algorithm
CLI proxy that reduces LLM token consumption by 60-90% on common dev commands. Single Rust binary, zero dependencies
Fast genomics quality control tools for sequencing data, written in Rust.
Alignment-based coordinate liftover for assemblies and GFA graphs.
Zotero MCP: Connects your Zotero research library with Claude and other AI assistants via the Model Context Protocol to discuss papers, get summaries, analyze citations, and more.
Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing
Tool for drawing gene structures from genome annotation files.
Point Cloud Local Ancestry Inference (PCLAI) on HPRC Release 2 samples
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
a set of SKILLS.md for doing bioinformatics with agents like claude code
A high-performance, ALL-in-ONE suite for quantitative genetics that unifies genome-wide association studies (GWAS) and genomic selection (GS).
RAGNAROK is a nextflow-implemented pipeline for rapid genome annotation using multiple lines of evidence.
Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chem…
Tutorials, Guides and Agent Skills Directories
Resume builder for academics and engineers
Strand and WGD aware syntenic gene identification
accurate LiftOver tool for new genome assemblies
GFA visualization tool - Rust reimplementation of odgi viz
genotype and visualize structural variants in the human pangenome graphs
An agentic skills framework & software development methodology that works.