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deacon Public
Fast DNA search and [host] depletion using minimizers
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seqsum Public
Robust individual and aggregate checksums for nucleotide sequences
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simd-minimizers Public
Forked from rust-seq/simd-minimizersA SIMD-accelerated library to compute random minimizers
Rust UpdatedMar 3, 2026 -
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knownknowns Public
Reference coverage and depth estimation using k-mers
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kindel Public
Indel-aware consensus for aligned BAM
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detaxizer Public
Forked from nf-core/detaxizerA pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
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AllTheBacteria Public
Forked from AllTheBacteria/AllTheBacteriaFollow up to Grace Blackwell's 661k dataset, for 2023
Python MIT License UpdatedJun 20, 2025 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedMar 14, 2025 -
primerschemes Public
Forked from quick-lab/primerschemesRepo for PrimerSchemes
HTML Creative Commons Attribution Share Alike 4.0 International UpdatedJun 11, 2024 -
rsvAB-sequencing Public
Forked from nebiolabs/rsvAB-sequencingNEBNext RSV A/B Multiplex PCR sequencing primers
GNU Affero General Public License v3.0 UpdatedJun 3, 2024 -
wf-template Public
Forked from epi2me-labs/wf-templateNextflow workflow template repository
Groovy Other UpdatedMay 15, 2024 -
dnaio Public
Forked from marcelm/dnaioRead and write FASTQ and FASTA efficiently from Python
Python MIT License UpdatedNov 20, 2023 -
vespasian Public
Genome-scale detection of selective pressure variation
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PTRHash Public
Forked from RagnarGrootKoerkamp/PtrHashPTRHash minimal perfect hash function, based of PTHash
Rust UpdatedNov 15, 2023 -
oci-cli Public
Forked from oracle/oci-cliCommand Line Interface for Oracle Cloud Infrastructure
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SARS-CoV-2-Contextual-Data-Specification Public
Forked from pha4ge/sars-cov-2-contextual-data-specificationCollection template and associated materials for SARS-CoV-2 metadata
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type_variants Public
Forked from snake-flu/type_variants -
betaflight Public
Forked from ctzsnooze/betaflightTests for future betaflight development
C GNU General Public License v3.0 UpdatedJun 5, 2023 -
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SARS-CoV-2 Public
Forked from quick-lab/SARS-CoV-2SARs-CoV-2 Primer schemes
HTML UpdatedApr 13, 2023
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