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assignTaxonomy returns Kingdom only against full GTDB SSU r232, but works if I trim the reference to genus

Status: Open.

#2205 In benjjneb/dada2;

· alegarritano opened on Jun 8, 2026

Using DADA2 with Aviti data?

Status: Open.

#2204 In benjjneb/dada2;

· dkholliman opened on Jun 1, 2026

questions about DADA2 on PacBio data

Status: Open.

#2203 In benjjneb/dada2;

· haniehshakeri94-cloud opened on May 26, 2026

Poor merging rate and reverse read quality degradation in DADA2 paired-end pipeline (V3-V4 16S)

Status: Open.

#2200 In benjjneb/dada2;

· metaguy2002 opened on May 15, 2026

errR <- learnErrors() Issue

Status: Open.

#2199 In benjjneb/dada2;

· bsbringhurst opened on May 14, 2026

Adapting assignSpecies() and assignTaxonomy() for trnL sequencing

Status: Open.

#2198 In benjjneb/dada2;

· Ashish-Subramanian opened on May 14, 2026

Filter and trim issue

Status: Open.

#2197 In benjjneb/dada2;

· Sgrg186 opened on Apr 29, 2026

Odd error plots

Status: Open.

#2196 In benjjneb/dada2;

· mycotonia3 opened on Apr 27, 2026

Multiple reference databases

Status: Open.

#2195 In benjjneb/dada2;

· owen-hughes42 opened on Apr 8, 2026

SILVA database v138.1

Status: Open.

#2194 In benjjneb/dada2;

· murheisa opened on Apr 7, 2026

Issue when mergerPairs

Status: Open.

#2193 In benjjneb/dada2;

· Channen1221 opened on Apr 3, 2026

V3-V4: huge chimeric read loss (more than 70% sequence variants flagged as chimeras)

Status: Open.

#2186 In benjjneb/dada2;

· pdhrati02 opened on Mar 25, 2026