Stars
CheMeleon Descriptor-based Foundation Model
Protein Language Modeling beyond static folds reveals sequence-encoded flexibility
BioDSA: Framework for Vibe Prototyping of AI Agents for Biomedicine
Wang, Z., Danek, B., Yang, Z. et al. Making large language models reliable data science programming copilots for biomedical research. Nat. Biomed. Eng (2026). https://doi.org/10.1038/s41551-025-015…
FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer
SE(3) Equivariant Flow Matching for Property-Guided Conditional Molecular Generation.
GitHub Copilot CLI brings the power of Copilot coding agent directly to your terminal.
Medea: An omics AI agent for therapeutic discovery
a set of SKILLS.md for doing bioinformatics with agents like claude code
🤖 A Python library for learning and evaluating knowledge graph embeddings
ImaGene: A multimodal ML/AI software with guided operational reports and supporting files
Deep Integrative Discriminant Analysis (Deep IDA) for Multi-view Data With Feature Ranking
Deep learning tools for peptide substrate prediction and generation
[NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
A hybrid pipeline to screen compounds with DrugCLIP and Schrodinger
Pocket Detection part of "Drug The Whole Genome" project
Comprehensive benchmarking of protein-ligand structure prediction methods. (Nature Machine Intelligence)
Verifying Facts in LLM-Generated Clinical Text with Electronic Health Records
Modelling human health trajectories using generative transformers
[PNAS 2025] Code of "Manifold-Constrained Nucleus-Level Denoising Diffusion Model for Structure-Based Drug Design".