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Neural species mediator
Material for Shiny Conf 2025 Workshop on Shiny performance
A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge
Make Picrust2 Output Analysis and Visualization Easier
Make awesome display tables using Python
SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.
A DSL for data-driven computational pipelines
A curated list of nextflow based pipelines
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
Materials for ShinyConf 2023 talk: Debugging With Shiny
Dashboard to explore my liked tweets (up to April 2023), and give links to resources.
🔐 Secure sharing of sensitive information in R packages
🔢 R package to the perl cloc script (which counts blank lines, comment lines, and physical lines of source code in source files/trees/archives)
Materials for Transcripromics Data Analysis course at Moscow State University
R package to infer biological activities from omics data using a collection of methods.
R package for Pathway RespOnsive GENe activity inference