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2026-jupyterlite-demo-1 Public
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJun 10, 2026 -
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sourmash_plugin_branchwater-feedstock Public
Forked from conda-forge/sourmash_plugin_branchwater-feedstockA conda-smithy repository for sourmash_plugin_branchwater.
Shell BSD 3-Clause "New" or "Revised" License UpdatedApr 26, 2026 -
Saturation curves rock!
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedApr 4, 2026 -
sourmash_plugin_abundhist Public
A plugin to display abundance histograms of k-mers based on sourmash sketches
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Use `manysearch` on many metagenomes (as queries)
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A quick demonstration of gapminder analysis using polars
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2026-sort-gff Public
GFF manipulation tools: sorting and fixing NCBI GFF => VEP
Python UpdatedJan 30, 2026 -
Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated
Jan 28, 2026 -
2026-bcb298-github-demo Public
I refuse
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 21, 2026 -
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run local branchwater manysearch for many query sketches
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 17, 2026 -
2026-rapid-snakemake-intro Public
A (very) rapid introduction to Snakemake
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 15, 2026 -
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scikit-learn Public
Forked from scikit-learn/scikit-learnscikit-learn: machine learning in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 29, 2025 -
get-some-ncbi-genomes Public
Download one or more NCBI genomes; includes sourmash plugin.
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2025-abundhist-isect Public
sourmash, abundhist, intersection of metagenome signatures with (pan)genomes.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedNov 3, 2025 -
2025-sourmash-math Public
some math stuff for sourmash and shotgun sequencing
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedNov 3, 2025 -
bbhash-feedstock Public
Forked from conda-forge/bbhash-feedstockA conda-smithy repository for bbhash.
BSD 3-Clause "New" or "Revised" License UpdatedOct 26, 2025 -
2025-sourmash-euk-gtdb-tax Public
Workflow to do a combined eukaryotic+GTDB taxonomic breakdown of metagenomes
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2025-grist-annie Public
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedSep 12, 2025 -
2025-sebastian-paper Public
Forked from ccbaumler/2025-sebastian-paperJupyter Notebook UpdatedSep 10, 2025 -
Scripts, tools, and techniques to investigate sourmash gather results
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 30, 2025 -
retrieve and shuffle sourmash manifests
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 30, 2025 -
2025-gina-GEMs Public
Forked from gina-v/GEMsContext Specific GEMs of STM
Python UpdatedAug 26, 2025 -
Calculate rank specific hashes from a sourmash LCA database
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