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Commits on Nov 24, 2014

• added documentation for cancer functionality (set_somatic, actionable_mutations, and fusions)

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• removed new sample amend from gemini fusions

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• unit tests for somatic and fusion modules

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Commits on Nov 21, 2014

• tweak history

  

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• add 0.11.0 to versioning reqs.

  

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• bump to 0.11.0

  

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• update history with changes in v0.11.0

  

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• fix ped

  

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• [DOC] update database docs to include SV columns and clinvar allele.

  

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Commits on Nov 20, 2014

• Merge branch 'master' of github.com:arq5x/gemini

  

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• get fircons from S3

  

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Commits on Nov 17, 2014

• Use correct separator for LOFTEE human_ancestor file. Thanks to @drmjc. chapmanb/bcbio-nextgen#468

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Commits on Nov 6, 2014

• Merge pull request #353 from cc2qe/master

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• Merge pull request #351 from bitdeli-chef/master

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• Add a Bitdeli badge to README

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• Merge pull request #350 from udp3f/master

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Commits on Nov 5, 2014

• Merge branch 'master' of github.com:arq5x/gemini

  

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• clinvar causal allele should be text

  

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• rename dbSNP file to represent timestamp

  

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• update to latest dbSNP(fixes the reported bug); rm unnecessary lines of code

  

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• add changes for latest dbSNP file

  

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Commits on Nov 4, 2014

• further refined actionable parameters

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• Merge pull request #349 from udp3f/master

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• refined the actionable mutations query to include non-exonic variants with high impact severity

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• added somatic score (SSC) filtering to set_somatic

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Commits on Nov 3, 2014

• add unit testing for ExAC

  

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• update docs for ExAC

  

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• add ExAC annotations

  

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• add new columns for ExAC data

  

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• add ExAC AF annotations

  

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• Merge pull request #348 from cc2qe/master

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• fixed problem with overreporting single-line variants

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Commits on Nov 2, 2014

• Merge branch 'master' of github.com:arq5x/gemini

  

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• issue \#347. handle multiple clinvar alleles.

  

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• Merge pull request #347 from cc2qe/master

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