PyMolAI provides Agentic interface to PyMol workflows, built on top of Open Source version of PyMol.

🎓 Academic portfolio that boosts citations. AI generates pages, you own as Markdown. BibTeX auto-import, Jupyter, LaTeX, slides, visual block editor — free to host forever. 学术主页，AI 生成，Markdown 拥有 👇

An easy (and fast) API for popular 3D molecular datasets!

RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Kaggle competition.

Making folding experiments more accessible .

Script for installing the most compatible version of copilot / copilot-chat in code-server

The official repository for "Multi-Scale Protein Structure Modelling with Geometric Graph U-Nets"

Markdown version of Reverse Engineering the source code of the BioNTech/Pfizer SARS-CoV-2 Vaccine

This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.

A fully open source biomolecular structure prediction model based on AlphaFold3

Platonic Transformers: A Solid Choice For Equivariance

Protein Engineering via Exploration of an Energy Landscape

Chemical mapping data for AI and Eterna designs from OpenKnot challenge

Toward High-Accuracy Open-Source Biomolecular Structure Prediction.

Dataset of RNA and RNA/Protein sequences and structures used in the RNA benchmark study.

Code for the paper LaM-SLidE - Latent Space Modeling of Spatial Dynamical Systems via Linked Entities

Hackable AlphaFold 3 inference pipeline.

Modeling whole bacterial genome as a sequence of proteins.

Point Edge Transformer

[NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.

A PyTorch implementation of Perceiver, Perceiver IO and Perceiver AR with PyTorch Lightning scripts for distributed training

FLOPS counter for all your GPU benchmarking needs

The goal of this project is to understand if the number of participate affects generalization of the model

All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins

ORB forcefield models from Orbital Materials

Cleaner and Formatter for BibTeX files

Takagi and Nishimoto, CVPR 2023