The Plutus language implementation and tools

Select coins, build transactions

You like pytorch? You like micrograd? You love tinygrad! ❤️

A small bash script that handles synchronization conflicts with Syncthing. Inspired by 'pacdiff' from Arch Linux.

Wrapper to read fast5, slow5, blow5 and pod5 files.

Economic Genome Assembly from Low Coverage Illumina and Nanopore Data

Future-proof note-taking and publishing based on Zettelkasten (superseded by Emanote: https://github.com/srid/emanote)

Selection on the Secondary Structure-test: a test that detects positive and negative selection from a set of orthologs, either small or long ncRNAs.

Retrieving full-length transcript orthologs from a reference list of long ncRNAs.

GSoC 2014

Passage is a PArallel SAmpler GEnerator. The user specifies a hierarchical Bayesian model and data using the Passage EDSL, and Passage generates code to sample the posterior distribution in parallel.

Haskell Equational Reasoning Model-to-Implementation Tunnel

ViennaRNA RNAfold using the ADPfusion library

Nussinov78 using the ADPfusion library

Efficient, high-level dynamic programming

A collection of modules for dealing with Protein Data Bank files

Importer for FR3D resources

RNAfold energy tables and Turner 2004 converter

Turner 2004 energy parameter parser

efficient encoding of short RNA and DNA sequences

no-frills Haskell arrays

streaming FASTA handling in Haskell

Haskell library to handle Infernal-related file formats