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Nature Methods: RNA foundation model (together with RhoFold)

Jupyter Notebook 379 46 Updated May 27, 2025

Biostatistics - Why? What? How?

HTML 60 26 Updated Jan 2, 2021

An AI Agent for Fully Automated Multi-omic Analyses

Python 230 38 Updated Nov 4, 2024

renv: Project environments for R.

R 1,155 165 Updated Jun 8, 2026

Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing

Python 15 5 Updated Aug 27, 2025

released version of APAIQ

Python 5 1 Updated Feb 2, 2025

翻墙-科学上网

Kotlin 47,846 8,114 Updated Jun 11, 2026

Stable Diffusion web UI

Python 163,749 30,376 Updated Mar 2, 2026
Python 15 3 Updated Apr 26, 2023

Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.

Java 80 15 Updated Mar 21, 2023

transcriptome-wide profiling 3'UTR splicing events using conventional RNA sequencing data

Shell 7 1 Updated Sep 28, 2021
R 2 Updated Nov 2, 2020

In silico method to predict the IPA-derived neoantigens based on large-scale RNA-seq datasets.

Perl 1 Updated Feb 25, 2020

A tool for the calculation of RNA-editing index for RNA seq data

Makefile 48 20 Updated Jan 8, 2026
C++ 96 30 Updated Jan 11, 2022

Full-Length Alternative Isoform analysis of RNA

Python 253 79 Updated May 19, 2026

Visualization of Functional Enrichment Result

R 258 75 Updated Apr 29, 2026

csf fork of fastqc for usage on selected reads of unaligned bam file

Java 49 40 Updated Mar 7, 2013

😍 Python 抖音机器人,论如何在抖音上找到漂亮小姐姐?

Python 9,619 1,901 Updated Oct 3, 2023

Scripts to analyze TCGA data

R 137 46 Updated Mar 16, 2024

An Expectation-Maximization algorithm to infer mutational signatures

C++ 27 8 Updated Nov 16, 2016

Biclustering algorithm

Python 58 21 Updated Dec 11, 2017

modENCODE Galaxy on Amazon Cloud

Shell 12 13 Updated Nov 13, 2014

MACS -- Model-based Analysis of ChIP-Seq

Python 776 274 Updated Jun 16, 2026