Stars
Scripts repository for Rosetta and MD simulation NCAA parameterization workflows
The public repository for the Core library of the Masala software suite. Masala is a set of free and open-source tools for biomolecular modelling, with a plugin-based infrastructure that makes it e…
Quick mapping of Uniprot sequences to PDB structures
Learning the language of protein-protein interactions
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
AlphaFold 3 inference pipeline.
Generative modeling of molecular dynamics trajectories
A tool for creating Quantitative Structure Property/Activity Relationship (QSPR/QSAR) models.
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer
FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
A generative model for programmable protein design
Diffusion-based all-atom protein generative model.
pyPept: a python library to generate atomistic 2D and 3D representations of peptides
ohuelab / ColabFold-cycpep-dock
Forked from sokrypton/ColabFoldMaking Protein folding accessible to all!
The Enhanced Database of Interacting Protein Structures for Interface Prediction
NES Super Mario Bros level 1 written in pure sed!
A tool to find cavities, pockets, and pores within a protein structure at variable resolution
Physicochemical properties, indices and descriptors for amino-acid sequences.
Repository accompanying the Peptide Screening paper by Charih et al.
python tools for TCR:peptide-MHC modeling and analysis