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TRACESPipeDeNovo: de-novo assembly and classification of viral genomes from FASTQ reads

Shell 2 2 Updated Oct 24, 2022

NGS viral assembly and population genetics

Python 1 1 Updated Mar 8, 2021

NGS viral assembly and population genetics

Python 9 7 Updated Mar 8, 2021

TRACESPipeLite: ultra-fast assembly of viral genomes from FASTQ reads

Shell 3 2 Updated May 23, 2025

Reconstruction and analysis of viral and host genomes at multi-organ level

Shell 21 7 Updated Apr 10, 2026

A tool for compression and analysis of DNA sequences

C 9 5 Updated Dec 23, 2016

A tool to find and visualize rearrangements in DNA sequences

C 16 4 Updated Sep 16, 2019

A memory efficient tool to map and visualize evolutionary regions

C 6 1 Updated Mar 11, 2020

An efficient amino acid sequence compressor using Neural Networks

C 6 3 Updated Oct 21, 2024

A genomics-proteomics toolkit

C 47 13 Updated Oct 18, 2023

Find and visualize rearrangements in DNA sequences

C++ 2 1 Updated Jun 16, 2020

An efficient DNA sequence compressor using Neural Networks

C 15 9 Updated Jan 25, 2023

A tool to infer metagenomic sample composition

C 20 7 Updated Oct 10, 2023

A secure encryption tool for genomic data

C++ 63 16 Updated May 3, 2026

AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data

C 10 1 Updated Mar 4, 2026

Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data

C 11 2 Updated Mar 5, 2026