Starred repositories
Your own personal AI assistant. Any OS. Any Platform. The lobster way. 🦞
🦖 ClawBio — The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨
NicheNet: predict active ligand-target links between interacting cells
AlphaFold 3 inference pipeline.
My contributions to the #TidyTuesday challenge, a weekly data visualization challenge. All plots are 💯 created in R with ggplot2.
Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them
Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
The benchmarking of spatial transcriptomics deconvolution methods
The official code repository for the second edition of the O'Reilly book Generative Deep Learning: Teaching Machines to Paint, Write, Compose and Play.
[WIP] Resources for AI engineers. Also contains supporting materials for the book AI Engineering (Chip Huyen, 2025)
CoCo-ST operates by taking two ST data sets as inputs: one serving as the reference and another as the target. These ST data sets typically have certain common structures that are usually not the p…
P-NET, Biologically informed deep neural network for prostate cancer classification and discovery
A collection of awesome LaTeX Thesis/Dissertation templates and beyond! //（LaTeX / Word / Typst / Markdown 格式的学位论文、演示文稿、报告、项目申请书、简历、书籍等模板收藏）
👔 A collection of cv and resume templates written in LaTeX. Leave an issue if your language is not supported!
Graph regularized nonnegative matrix factorization (GNMF) in Python
Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis
Spatial mapping of cell types by integration of transcriptomics data
R package implementation of Milo for testing for differential abundance in KNN graphs
Fast genome-wide functional annotation through orthology assignment
STAgent is a multimodal LLM-based AI agent that enables deep research about spatial transcriptomics data