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Pull requests list

Add file extension used in nf-core
#952 opened Apr 28, 2026 by LouisLeNezet Loading…
1
Add RefMet identifier concept (data_4065) concept/term addition Request for a new concept(s), or change(s) to existing concept(s) high priority merge 3rd Merge this PR as the 3rd (except "merge anytime"). The typical reason is the IDs!
#949 opened Feb 26, 2026 by jonathan-hunter Collaborator Loading… 1.26
@matuskalas
9
Added Compound identification operation and Metabolite annotation file format concept/term addition Request for a new concept(s), or change(s) to existing concept(s) high priority merge 3rd Merge this PR as the 3rd (except "merge anytime"). The typical reason is the IDs!
#942 opened Feb 11, 2026 by jonathan-hunter Collaborator Loading… 1.26
@matuskalas
17
Updated the documentation in CONTRIBUTING.md
#941 opened Feb 9, 2026 by rioualen Member Loading…
8
add terms for ISA-JSON, mwTab, MHD, MHD announcement file formats concept/term addition Request for a new concept(s), or change(s) to existing concept(s) high priority merge 3rd Merge this PR as the 3rd (except "merge anytime"). The typical reason is the IDs!
#937 opened Jan 9, 2026 by jonathan-hunter Collaborator Loading… 1.26
@matuskalas
26
Addition of ISA-Tab component files 'Investigation', 'Study', 'Assay' concept/term addition Request for a new concept(s), or change(s) to existing concept(s) high priority merge 2nd Merge this PR as the 2nd (except "merge anytime"). The typical reason is the IDs!!
#936 opened Jan 8, 2026 by jonathan-hunter Collaborator Loading… 1.26
@matuskalas
29
New children of "Microarray experiment" topic concept/term addition Request for a new concept(s), or change(s) to existing concept(s)
#933 opened Dec 8, 2025 by rioualen Member Loading…
@rioualen
2
Added 2 new RNA-seq children topics concept/term addition Request for a new concept(s), or change(s) to existing concept(s)
#932 opened Dec 8, 2025 by rioualen Member Loading…
@rioualen
2
2025 11 05 mass spectrum parent done in WebProtégé Done in WebProtégé, TODO pull request & merge duplicate This issue or pull request already exists polishing Does not extend the content or functionality, but improves other qualities
#925 opened Nov 5, 2025 by rioualen Member Loading…
7
Added concepts DNA methylation, Bisulfite sequencing, Bulk sequencing, DNase sequencing in topics concept/term addition Request for a new concept(s), or change(s) to existing concept(s)
#920 opened Aug 22, 2025 by rioualen Member Loading… 1.26
@rioualen
3
Addition of new concepts related to sequencing experiments. concept/term addition Request for a new concept(s), or change(s) to existing concept(s)
#916 opened Apr 23, 2025 by rioualen Member Loading… 1.26
@rioualen
10
updated duplicate synonyms and labels
#858 opened Dec 16, 2022 by LucieLamothe Collaborator Loading…
1
Resolve subset declaration issue
#857 opened Dec 16, 2022 by LucieLamothe Collaborator Loading…
1
Add fast5 format concept/term addition Request for a new concept(s), or change(s) to existing concept(s) manual merge needed PR waiting to be merged merge 3rd Merge this PR as the 3rd (except "merge anytime"). The typical reason is the IDs!
#848 opened Aug 23, 2022 by Kigaard Member Loading… 1.26
1
@matuskalas @rioualen
6
High-level grooming of some topics manual merge needed PR waiting to be merged merge anytime Merge this PR anytime. It shouldn't interfere with new IDs, and ideally also not with other PRs much
#837 opened May 25, 2022 by matuskalas Member Loading…
2 tasks
@matuskalas
6
feat: added format for MPP
#821 opened Mar 29, 2022 by jonrkarr Contributor Loading…
1
Added format FID, FCF, HKL concept/term addition Request for a new concept(s), or change(s) to existing concept(s) high priority manual merge needed PR waiting to be merged
#820 opened Mar 24, 2022 by cb2993 Contributor Loading… 1.26
8
Logical modeling jonrkarr manual merge needed PR waiting to be merged test PR A test PR. Do not merge ;D
#819 opened Mar 16, 2022 by LucieLamothe Collaborator Loading…
1
Deprecated operation_3206 added topic Whole genome methylation analysis
#802 opened Dec 23, 2021 by LucieLamothe Collaborator Loading…
1
5
feat: added formats for logical modeling concept/term addition Request for a new concept(s), or change(s) to existing concept(s)
#767 opened Sep 21, 2021 by jonrkarr Contributor Loading… 1.26
@matuskalas
2
Added terms for formats for BioSimulators concept/term addition Request for a new concept(s), or change(s) to existing concept(s)
#766 opened Sep 21, 2021 by jonrkarr Contributor Loading… 1.26
18
@matuskalas
3
Polished formating of some links & others high priority manual merge needed PR waiting to be merged polishing Does not extend the content or functionality, but improves other qualities
#758 opened Sep 11, 2021 by matuskalas Member • Draft 1.26
@matuskalas
11
Test PR from an instance of a fork that is a template test PR A test PR. Do not merge ;D
#748 opened Aug 20, 2021 by matuskalas Member • Draft
2
added new format for smolydn language
#717 opened Jun 4, 2021 by raashika03 Contributor Loading… 1.26
1
@matuskalas
1
added new format for copasiML
#716 opened Jun 4, 2021 by raashika03 Contributor Loading… 1.26
1
@matuskalas
1
ProTip! Exclude everything labeled bug with -label:bug.