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Dashboard based on open access, public data related to the the 2026 Ebola Bundibugyo oubtreak

HTML 11 5 Updated Jun 21, 2026

Data and scripts for epidemiological analysis of the 2026 Bundibugyo Ebola outbreak

Python 49 16 Updated Jun 22, 2026

TradingAgents: Multi-Agents LLM Financial Trading Framework

Python 88,047 17,003 Updated Jun 22, 2026

Fast, lightweight markdown viewer for Linux with tabs, file explorer, and live reload

Rust 24 4 Updated Jun 19, 2026
R 37 2 Updated Jun 10, 2026

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

Python 992 218 Updated Jun 22, 2026

162 production-ready AI agent templates for OpenClaw. SOUL.md configs across 19 categories. Submit yours!

HTML 3,720 607 Updated May 25, 2026

The best way to build a personality for your agent. Let Claude Code / OpenClaw ingest your data & build your AI soul.

588 66 Updated Jun 22, 2026

Build your agent team in OpenClaw with one command.

TypeScript 2,483 451 Updated Feb 26, 2026

Probability generating function methodology for epidemic metapopulation models.

Jupyter Notebook 2 1 Updated Jan 19, 2026

Install and run Openclaw on a Raspberry Pi4 securely

Shell 29 2 Updated Jan 31, 2026

Minimal CLI coding agent by Mistral

Python 4,561 556 Updated Jun 19, 2026

Inference of R(t) using epidemic and genomic data

R 2 Updated Sep 10, 2025
Nextflow 1 Updated May 8, 2026

Official LaTeX templates employing the Imperial College London brand.

TeX 46 21 Updated Oct 5, 2025

Rt from sequences vs case counts: simulation-based comparisons

R 1 Updated Apr 28, 2026

BBTools: Official suite of fast, multithreaded bioinformatics tools for DNA/RNA analysis. BBMap aligner, BBDuk trimmer, BBMerge, and 90+ other tools. Actively maintained by Brian Bushnell.

Java 79 7 Updated Jun 22, 2026

Snakemake pipeline for simulating shotgun metagenomic samples

Python 29 3 Updated Mar 13, 2026

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Rust 312 19 Updated Feb 3, 2026

Coalescent Odds

R 10 1 Updated Mar 1, 2026

PROJECT_INDEX system for Claude Code - provides architectural awareness for AI coding

Python 195 57 Updated Sep 16, 2025

Genome modeling and design across all domains of life

Jupyter Notebook 3,950 505 Updated Jun 19, 2026

Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data

Python 53 10 Updated Jun 22, 2026

Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees

Python 12 2 Updated Sep 6, 2023

Agents for Claude Code

23 1 Updated May 6, 2026

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various us…

JavaScript 75 8 Updated Jun 18, 2026

A simplified workflow to run KPop (https://github.com/PaoloRibeca/KPop) for disease outbreak clustering and classification

Nextflow 3 Updated Jan 23, 2026
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