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needle Public
Forked from seqan/needleFast and efficient searches of NGS data
C++ Other UpdatedMar 31, 2026 -
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seqan3 Public
Forked from seqan/seqan3The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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actions Public
Forked from seqan/actionsShell Creative Commons Attribution 4.0 International UpdatedMar 19, 2026 -
tool_description_lib Public
Forked from deNBI-cibi/tool_description_libA library to output tool description files like CTD or CWL
C++ UpdatedMar 19, 2026 -
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yaml-cpp Public
Forked from jbeder/yaml-cppA YAML parser and emitter in C++
C++ MIT License UpdatedMar 12, 2026 -
usage_plots Public
Forked from OpenMS/usage_plotsScripts for generating plots about the usage of OpenMS
R UpdatedMar 10, 2026 -
sharg-parser Public
Forked from seqan/sharg-parserTHE argument parser for bio-c++ tools.
C++ Other UpdatedMar 9, 2026 -
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raptor Public
Forked from seqan/raptorA fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
C++ Other UpdatedMar 2, 2026 -
dream-stellar Public
Forked from seqan/dream-stellarWork in progress master's thesis project. Pre-filter for querying sequencing reads against a metagenomics database to find approximate local matches.
C++ BSD 3-Clause "New" or "Revised" License UpdatedMar 1, 2026 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedFeb 11, 2026 -
ganon Public
Forked from pirovc/ganona read classification tool based on Interleaved Bloom Filters
Python MIT License UpdatedFeb 10, 2026 -
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conan-center-index Public
Forked from conan-io/conan-center-indexRecipes for the ConanCenter repository
Python MIT License UpdatedJan 28, 2026 -
ccache Public
Forked from ccache/ccacheccache – a fast compiler cache
C++ Other UpdatedJan 27, 2026 -
chopper Public
Forked from seqan/chopperA tool for partitioning a set of sequences into similar batches.
C++ BSD 3-Clause "New" or "Revised" License UpdatedJan 27, 2026 -
app-template Public template
Forked from seqan/app-templateThis is a template for app developers with SeqAn3. You can easily clone this repository and modify the existing code to your needs. It provides the elementary set-up for all SeqAn3 applications.
CMake Other UpdatedJan 24, 2026 -
simde Public
Forked from simd-everywhere/simdeImplementations of SIMD instruction sets for systems which don't natively support them.
C MIT License UpdatedJan 6, 2026 -
shopping_cart_queue Public
Forked from https://github.com/marehr/shopping_cart_queue
C++ Other UpdatedDec 15, 2025 -
hibf_benchmarks Public
Forked from seqan/hibf_benchmarksWIP HIBF benchmarks
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 13, 2025 -
sdsl-lite Public
Forked from xxsds/sdsl-liteSuccinct Data Structure Library 3.0 (unstable, prerelease)
C++ Other UpdatedNov 7, 2025 -
seqan-std Public
Forked from seqan/seqan-stdImplementation of several C++23 views
C++ Other UpdatedAug 22, 2025 -
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gcc-build Public
A script for building GCC on AMD64 platforms
Shell BSD 3-Clause "New" or "Revised" License UpdatedMay 22, 2025 -
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