Minimal yet performant LLM examples in pure JAX

A modern step-through debugger for GHC Haskell

Haskell in-memory distributed database

Static site generator that supports Markdown and reST syntax. Powered by Python.

A fast static site generator in a single binary with everything built-in. https://www.getzola.org

Source code and related materials for the O'Reilly book

The code for the paper "A Bayesian Approach to Online Planning" published in ICML 2024.

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

Haskell bindings for MLIR

This is a Rust implementation of the next-gen sequencing toolkit (NEAT). `rneat` features expanded features, including GC Bias and the ability to model cancer genetics

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

SEIKO is a novel reinforcement learning method to efficiently fine-tune diffusion models in an online setting. Our methods outperform all baselines (PPO, classifier-based guidance, direct reward ba…

A repo for distributed training of language models with Reinforcement Learning via Human Feedback (RLHF)

ICU-Sepsis is a lightweight, yet challenging RL environment that models the treatment of sepsis in the ICU.

[RelKD'24] Mamba4Rec: Towards Efficient Sequential Recommendation with Selective State Space Models

R package for DNA methylation analysis

Annotated version of the Mamba paper

Producer and consumer actors with back-pressure for Elixir

Operate and manipulate physical quantities in Python

JAX bindings for Flash Attention v2

Official JAX implementation of xLSTM including fast and efficient training and inference code. 7B model available at https://huggingface.co/NX-AI/xLSTM-7b.

Deep Learning-based Frozen Section to FFPE Translation

Agent Laboratory is an end-to-end autonomous research workflow meant to assist you as the human researcher toward implementing your research ideas

Various syntactic sugar functions and structures to make python easier in the repl

FASTQ compression

The fuzzer afl++ is afl with community patches, qemu 5.1 upgrade, collision-free coverage, enhanced laf-intel & redqueen, AFLfast++ power schedules, MOpt mutators, unicorn_mode, and a lot more!

BioCoder: A Benchmark for Bioinformatics Code Generation with Large Language Models https://arxiv.org/abs/2308.16458