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@fernphy

fernphy

FTOL Working Group
README.md

fernphy

Github organization of the Fern Tree of Life (FTOL) working group

The goal of the FTOL working group is to maintain a continuously updated global fern phylogeny.

The phylogeny is built with plastid DNA sequences from GenBank.

For more information about the project, see our homepage: https://fernphy.github.io.

Repo overview

  • ftol: The pipeline to build FTOL.

  • ftol_data: FTOL and associated datasets (output of the pipeline).

  • ftolr: R package to enable easy loading of FTOL and associated datasets into R.

  • ftol_ms: Code to generate the manuscript describing FTOL.

  • ftol_vis: Code to visualize FTOL.

  • ftol_shiny: Code to make shiny apps serving FTOL.

  • fernphy.github.io: Our homepage.

  • ferncal: A database of fern fossils for molecular dating of FTOL.

  • pteridocat: R package containing a taxonomic database of pteridophytes, can be used to standardize taxonomic names to those in FTOL.

Pinned Loading

  1. pteridocat pteridocat Public

    A taxonomic database of pteridophytes

    R 1 1

  2. fernphy.github.io fernphy.github.io Public

    Homepage of the FTOL project

    R 1 1

  3. ferncal ferncal Public

    A database of fossils for molecular dating of the fern tree of life

    TeX 2 1

  4. ftol ftol Public

    Pipeline to generate the Fern Tree of Life

    R 4 1

  5. ftolr ftolr Public

    R package serving data for the Fern Tree of Life (FTOL)

    R 1 1

  6. ftol_ms ftol_ms Public

    Code to generate the manuscript "An open and continuously updated fern tree of life (FTOL)"

    R 1 1

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