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This might be handy for nucleotide download#25

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This might be handy for nucleotide download#25
langelog wants to merge 2 commits into
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@langelog langelog commented Apr 6, 2020 •
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library to download nucleotides by name according to ncbi library.
It uses BeautifulSoup to parse html.

usage example:

import nucleotide
RNA = {}
# If its not already downloaded, will download and put it in data directory
# and return the rna
RNA["NC_045512.2"] = nucleotide.get("NC_045512.2")

@langelog
This might be handy
95af646 
library to download nucleotides by name according to ncbi library
@langelog langelog changed the title This might be handy This might be handy for any nucleotide download Apr 6, 2020
@langelog langelog changed the title This might be handy for any nucleotide download This might be handy for nucleotide download Apr 6, 2020
langelog
langelog commented Apr 7, 2020
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Comment thread nucleotide.py Outdated
except Exception as err:
print(err)

fasta_files = [join(data_dir,f) for f in listdir(data_dir) if isfile(join(data_dir, f)) and fasta_pattern.match(f)]

@langelog langelog Apr 6, 2020

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woops, this line should be in available() function

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