Starred repositories
The consensus GEM for Saccharomyces cerevisiae
Genome-scale metabolic model of Cordyceps militaris
Genome scale metabolic models in SBML format
breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq …
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
A genome diagram generator for microbes and organelles
A collection of M models downloaded from published studies
MCP server for genome-scale metabolic modeling with ModelSEEDpy and COBRApy
A new high-resolution long-read metagenome assembler for even noisy reads
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
Repository of tutorials for The COBRA Toolbox
前端开发常用文档/网站地址、样式/js方法封装库、项目模板。提供Chrome拓展程序
Python package to access and download data from the ATCC Genome Portal (https://genomes.atcc.org/)
🔬 microbes-dbs utilities to fetch microbe relevant databases
Vienna is a free and open-source RSS/Atom/JSON feed newsreader for macOS.
NCBI Prokaryotic Genome Annotation Pipeline
Common Workflow Language reference implementation
A collection of snakemake scripts to streamline genome annotation
MACAW: a Python package for automatically detecting potential errors in genome-scale metabolic models
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
Tool for producing high quality forecasts for time series data that has multiple seasonality with linear or non-linear growth.
12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all
Bioinformatics Workbook repository
GitHub Actions for GitHub Pages 🚀 Deploy static files and publish your site easily. Static-Site-Generators-friendly.
《Bash脚本进阶指南》第十次修订本中文版
RNA-seq workflow using STAR and DESeq2